Clone BS20104 Report

Search the DGRC for BS20104

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG14342-RB
Protein status:BS20104.pep: full length peptide match
Sequenced Size:458

Clone Sequence Records

BS20104.complete Sequence

458 bp assembled on 2011-01-07

GenBank Submission: KX803079

> BS20104.complete
GAAGTTATCAGTCGACATGGATAAACTGCGAGGCAACAATGCGGCTAGCG
AGAATCCCTTCAAGCGGCCGATGAATGCCCTCCAGAAGCAGTGGTACCGC
GTCCTGCTGGCCCGCCGTGTGGGATTCGGGCAGCGTCCTCCGCCCGACGA
AAAGGAGCTAACGTACGCCGACATTTGTCGTAAGCGCTATGCGGCATCGT
TCCGGCGATACAACGAGTGTTTCCGCCGGGAAATGGCCAAACATGAGGAG
ATGCAGCGATGCGCCATCGACGCCATGAGGGTACACAGAACCTTTGCCAT
CACCACACTTTGGCTACCTTTGCACTCGAAGCGGGAAATCAACTCAACGC
TGGAAACCCTCGAAAAGGTTCTCACCGCCAAGGAAAGACGACGCCTGCAG
GAGATTCTCAAGCAGGGAGAGTCCTGGCACTCGCACCGCTAAAAGCTTTC
TAGACCAT

BS20104.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14342-RB 426 CG14342-PB 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14342-RB 802 CG14342-RB 102..527 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1204316..1204464 17..165 745 100 Plus
2L 23513712 2L 1204565..1204687 166..288 615 100 Plus
2L 23513712 2L 1204759..1204843 285..369 425 100 Plus
2L 23513712 2L 1204899..1204975 366..442 385 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:41:06 has no hits.

BS20104.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:45 Download gff for BS20104.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 76..499 17..440 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:11 Download gff for BS20104.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 102..525 17..440 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:57 Download gff for BS20104.complete
Subject Subject Range Query Range Percent Splice Strand
CG14342-RB 102..525 17..440 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:57 Download gff for BS20104.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1204316..1204464 17..165 100 -> Plus
2L 1204565..1204687 166..288 100 -> Plus
2L 1204763..1204841 289..367 100 -> Plus
2L 1204901..1204973 368..440 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:11 Download gff for BS20104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1204316..1204464 17..165 100 -> Plus
arm_2L 1204565..1204687 166..288 100 -> Plus
arm_2L 1204763..1204841 289..367 100 -> Plus
arm_2L 1204901..1204973 368..440 100   Plus

BS20104.pep Sequence

Translation from 16 to 441

> BS20104.pep
MDKLRGNNAASENPFKRPMNALQKQWYRVLLARRVGFGQRPPPDEKELTY
ADICRKRYAASFRRYNECFRREMAKHEEMQRCAIDAMRVHRTFAITTLWL
PLHSKREINSTLETLEKVLTAKERRRLQEILKQGESWHSHR*

BS20104.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14342-PB 141 CG14342-PB 1..141 1..141 749 100 Plus