BS20105.complete Sequence
581 bp assembled on 2011-01-07
GenBank Submission: KX803087
> BS20105.complete
GAAGTTATCAGTCGACATGTGGTACAGCAAGTGCAGTTGGACTTTGGTAG
TGTTGGTGGCTCTCTTTGCTCTCGTGACAGGTTCCTGCCTGGAATACGGA
CATTCGTGTTGGGGAGCTCATGGCAAGCGGTCCGGCGGGAAGGCGGTCAT
AGATGCTAAACAGCATCCCTTGCCAAATTCATATGGCTTGGATAGCGTGG
TGGAGCAACTGTACAACAACAACAACAACAACCAGAACAACCAGGACGAC
GACAACAACGATGACGACAGCAACAGAAATACGAATGCGAATAGTGCCAA
CAACATACCCCTGGCTGCTCCAGCCATTATAAGTCGTCGAGAATCGGAGG
ATCGGCGAATCGGTGGCCTAAAGTGGGCGCAGCTGATGCGGCAGCACCGC
TATCAATTGCGCCAGTTGCAGGATCAGCAGCAGCAGGGGCGTGGCAGGGG
CGGTCAGGGTCAGTACGATGCGGCAGCCGAGAGTTGGAGGAAACTGCAGC
AGGCTCTGCAGGCCCAAATCGATGCCGACAATGAGAACTACTCGGGCTAC
GAGCTAACGAAGTGAAAGCTTTCTAGACCAT
BS20105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa1-RB | 549 | CG14358-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa1-RB | 857 | CG14358-RB | 177..726 | 17..566 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14092635..14093042 | 566..159 | 2040 | 100 | Minus |
| 3R | 32079331 | 3R | 14096594..14096659 | 82..17 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 14093137..14093185 | 163..115 | 245 | 100 | Minus |
| 3R | 32079331 | 3R | 14093273..14093311 | 116..78 | 195 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2642 | 214..436 | 149 | 56.5 | Plus |
BS20105.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:46 Download gff for
BS20105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14358-RB | 177..724 | 17..564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:12 Download gff for
BS20105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa1-RB | 177..724 | 17..564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:00 Download gff for
BS20105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa1-RB | 177..724 | 17..564 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:00 Download gff for
BS20105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14092637..14093037 | 164..564 | 100 | <- | Minus |
| 3R | 14093137..14093183 | 117..163 | 100 | <- | Minus |
| 3R | 14093273..14093308 | 81..116 | 100 | <- | Minus |
| 3R | 14096596..14096659 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:12 Download gff for
BS20105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9918359..9918759 | 164..564 | 100 | <- | Minus |
| arm_3R | 9918859..9918905 | 117..163 | 100 | <- | Minus |
| arm_3R | 9918995..9919030 | 81..116 | 100 | <- | Minus |
| arm_3R | 9922318..9922381 | 17..80 | 100 | | Minus |
BS20105.pep Sequence
Translation from 16 to 564
> BS20105.pep
MWYSKCSWTLVVLVALFALVTGSCLEYGHSCWGAHGKRSGGKAVIDAKQH
PLPNSYGLDSVVEQLYNNNNNNQNNQDDDNNDDDSNRNTNANSANNIPLA
APAIISRRESEDRRIGGLKWAQLMRQHRYQLRQLQDQQQQGRGRGGQGQY
DAAAESWRKLQQALQAQIDADNENYSGYELTK*
BS20105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa1-PB | 182 | CG14358-PB | 1..182 | 1..182 | 977 | 100 | Plus |
