BS20108.complete Sequence
1646 bp assembled on 2011-01-07
GenBank Submission: KX800781
> BS20108.complete
GAAGTTATCAGTCGACATGACGACGTGTTTGCGCAGCGGAGTGTTAATAA
TTGTTTTGCTTGGGATTCTGGGAATTCCCGAACCGATATCTGCCGGTAAT
ATTCTGGCCGTGTATCCGCATTTCGGCTTCAGCCACTTCAAGGTGGTGAT
GCCCATCCTGAACGAGCTGGCGCATCGTGGTCATGACATCACGGTAATCT
CGTACGTTAAGAACCCCCAAGCCGGAGCCTATCCCAACTATGAGGAGCTA
CTGATTTCGGCTCCCGGTGAGGATCAGTCGAGCACCACGATCAACTTGGT
TCCCCTGACGGAGCACACACCCACCAGATCCCTGGGAGTCCTCATCCGTG
AGTATGTAGATCTGCACGAAGAGGGCCAGAAGACCTGCGAGCACCTCTTC
GCCAGTGGCCACATAGAACGGGCCATCGAACGACATCGAAATAAGCCCTA
CGATCTGCTACTCACGGAATACTTCAACTCCGATTGCCAACTGGCCTTGG
CCAAGTTATTAAATCTGCCAATTATAGGCTTAAGTACCTGCGCGCTGATG
CCCTACTATTACGATCGCATCGATTTGCCCGACACACCTGCCTTCATACA
GTCGGAATTCGTGGGTTTCGCTGGCCAACTGAACTGGCACGAACGGCTGC
TCAACTTTGTTCAGGCCAAGTTATTAAAGTTTCTGTACAAGTACCATTCC
AACAGGGCTGACAACGAGTTGGTACGGAAGTATCTTGGAGTGGAAGTAGA
CGTAGAAGAAGTAGCTCGAACTCAAACTGCTTTTATATTTGGAAACCAAC
ATTACTCCCTGATGGGAAGTCGTCCACAATCACTGCAATTTGTGGAAATC
GGAGGAGTACATATCACCAAGAAAGCGGAGCAGGAGTTACCCCAGAATAT
CGCCAATTTCCTTAACCAATCAGCAGAGGGTGTGATCTTCATAAGCTGGG
GTTCAATGGTGCGGGCTTCAAGTATTGACGAAGATAAACTGTCAGCCATA
CTAGAAGTTCTAAAAAGCCAGCCCTTGAAGATCATCTGGAAATGGGAGGC
GGATGAGACTCCCGATACAGATGCCTCCAAGTTTCTCTTCGTCAAATGGG
CTCCCCAATTGGCGCTTCTATGTCACCCAAAAGTAAAGTTGTTTTGGTCC
CATGGCGGCTTACTTGGAACCACTGAATCGGTGCATTGTGGCAAACCCCT
ACTAGTCACCCCAATCTACGGAGATCAATTCCTTAATGCATTCTCGGTGC
AAAATCGGGGAATGGGTCTGAAGTTGGACTACCAAGACATCACTGTACCA
AACCTAAAGAAAGCTCTTGCAGAGCTCAGCAAAAACAGCTATGCCCAACG
ATCTCTTGAGGTCTCCAAGGTGTTCAATGAGCGTCAGCAGACGCCTCTGG
AATCAGCCATTTGGTCTGTGGAACACGTCATTAGCAATGGATTGATTGCC
GCCAGACTACTTCAATCTCCAGGCATAGAACTGAATGGATTTGTCTACCA
TTCACTGGATAGTGTAGCCCTGATCCTGTTACCTTTAATTTTACTGATCC
TAGTCCTATGCTATCTGTGCAAACGGAATCCATCGAAGTTGGCCCACAAG
AAAGTTGGCAAGAAGCCAAAGAGATCGTAGAAGCTTTCTAGACCAT
BS20108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dot-RB | 1614 | CG2788-PB | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| Dot-RA | 1614 | CG2788-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dot-RB | 2303 | CG2788-RB | 190..1803 | 17..1630 | 8070 | 100 | Plus |
| Dot-RA | 1720 | CG2788-RA | 9..1622 | 17..1630 | 8070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3619286..3620392 | 17..1123 | 5535 | 100 | Plus |
| 2L | 23513712 | 2L | 3620779..3621073 | 1336..1630 | 1475 | 100 | Plus |
| 2L | 23513712 | 2L | 3620509..3620725 | 1122..1338 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:41:42 has no hits.
BS20108.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:50 Download gff for
BS20108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dot-RA | 96..1709 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:17 Download gff for
BS20108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dot-RA | 9..1622 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:10 Download gff for
BS20108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dot-RA | 9..1622 | 17..1630 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:10 Download gff for
BS20108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3620782..3621073 | 1339..1630 | 100 | | Plus |
| 2L | 3619286..3620390 | 17..1121 | 100 | -> | Plus |
| 2L | 3620509..3620725 | 1122..1338 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:17 Download gff for
BS20108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3619286..3620390 | 17..1121 | 100 | -> | Plus |
| arm_2L | 3620509..3620725 | 1122..1338 | 100 | -> | Plus |
| arm_2L | 3620782..3621073 | 1339..1630 | 100 | | Plus |
BS20108.pep Sequence
Translation from 16 to 1629
> BS20108.pep
MTTCLRSGVLIIVLLGILGIPEPISAGNILAVYPHFGFSHFKVVMPILNE
LAHRGHDITVISYVKNPQAGAYPNYEELLISAPGEDQSSTTINLVPLTEH
TPTRSLGVLIREYVDLHEEGQKTCEHLFASGHIERAIERHRNKPYDLLLT
EYFNSDCQLALAKLLNLPIIGLSTCALMPYYYDRIDLPDTPAFIQSEFVG
FAGQLNWHERLLNFVQAKLLKFLYKYHSNRADNELVRKYLGVEVDVEEVA
RTQTAFIFGNQHYSLMGSRPQSLQFVEIGGVHITKKAEQELPQNIANFLN
QSAEGVIFISWGSMVRASSIDEDKLSAILEVLKSQPLKIIWKWEADETPD
TDASKFLFVKWAPQLALLCHPKVKLFWSHGGLLGTTESVHCGKPLLVTPI
YGDQFLNAFSVQNRGMGLKLDYQDITVPNLKKALAELSKNSYAQRSLEVS
KVFNERQQTPLESAIWSVEHVISNGLIAARLLQSPGIELNGFVYHSLDSV
ALILLPLILLILVLCYLCKRNPSKLAHKKVGKKPKRS*
BS20108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dot-PB | 537 | CG2788-PB | 1..537 | 1..537 | 2785 | 100 | Plus |
| Dot-PA | 537 | CG2788-PA | 1..537 | 1..537 | 2785 | 100 | Plus |
| CG17323-PD | 519 | CG17323-PD | 30..518 | 29..532 | 789 | 34.3 | Plus |
| CG17323-PC | 519 | CG17323-PC | 30..518 | 29..532 | 789 | 34.3 | Plus |
| CG17323-PE | 519 | CG17323-PE | 30..518 | 29..532 | 789 | 34.3 | Plus |
