Clone BS20110 Report

Search the DGRC for BS20110

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG30096-RB
Protein status:BS20110.pep: full length peptide match
Sequenced Size:692

Clone Sequence Records

BS20110.complete Sequence

692 bp assembled on 2011-01-07

GenBank Submission: KX803491

> BS20110.complete
GAAGTTATCAGTCGACATGTCGGATTTGGGGAAAGATGTGGCGAGCGAAG
AAGGCTCCAATGGAAGCAGGGAAACCATTTGGTACACCATTGGAGAGCTT
GTGGAAATGGTCGAGTGTCCAGGTTGTGGAATATCCATGGTATCGTTCAA
AAATCGCTTCGCCCACATCAAGAAGTGCTTCAGCATCAAGAGACGAGGTC
CTTTGTACAGGATTTATGGATATGCGGAGTGCAAGTGCGGCTTTCTTATT
GCAGACACGGAAAAAGCCCGGAAACTGCATTGTTGTTCGGGAAAACTTCG
CCCCTGCAAGCCAATCATACCAACTGAGCCGAAAGTCCCGGTGACAAAAC
ATGCTGAAGAACTAACATCAACTAAAAGGGAACAGGCTTTGCAGCCGTTG
ATTAGAAATTTTATCAGTCCCATCAAACAACAGGAGTTTCCATCTTTGGA
TATATCATATTCCAGTAAATATGATCCTAAACCAACATCGAGGCCACGCG
TCCGTAACTTTGATAGACCACACAGAAGTCAAGCTCCAAAGGAAGTCTGT
GTGTACTCCATAATTCGGAGGAATGGGGCTATCTCAGTGACAGGAAGATC
CATCGTTAGGTACCGGGGTGGCAACGAAAACCTTGCCATACTTAAAAGGC
GAGAATTAAAAATAAAATACGTATAAAAGCTTTCTAGACCAT

BS20110.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG30096-RB 660 CG30096-PB 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30096-RB 1130 CG30096-RB 159..818 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16321127..16321514 676..289 1940 100 Minus
2R 25286936 2R 16321565..16321819 294..40 1260 99.6 Minus
Blast to na_te.dros performed on 2014-11-26 15:40:26 has no hits.

BS20110.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:39 Download gff for BS20110.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 107..764 17..674 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:03 Download gff for BS20110.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 159..816 17..674 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:43 Download gff for BS20110.complete
Subject Subject Range Query Range Percent Splice Strand
CG30096-RB 159..816 17..674 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:43 Download gff for BS20110.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16321129..16321513 290..674 100 <- Minus
2R 16321570..16321818 41..289 100 <- Minus
2R 16321873..16321896 17..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:03 Download gff for BS20110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12208634..12209018 290..674 100 <- Minus
arm_2R 12209075..12209323 41..289 100 <- Minus
arm_2R 12209378..12209401 17..40 100   Minus

BS20110.pep Sequence

Translation from 16 to 675

> BS20110.pep
MSDLGKDVASEEGSNGSRETIWYTIGELVEMVECPGCGISMVSFKNRFAH
IKKCFSIKRRGPLYRIYGYAECKCGFLIADTEKARKLHCCSGKLRPCKPI
IPTEPKVPVTKHAEELTSTKREQALQPLIRNFISPIKQQEFPSLDISYSS
KYDPKPTSRPRVRNFDRPHRSQAPKEVCVYSIIRRNGAISVTGRSIVRYR
GGNENLAILKRRELKIKYV*

BS20110.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG30096-PB 219 CG30096-PB 1..219 1..219 1158 100 Plus