BS20110.complete Sequence
692 bp assembled on 2011-01-07
GenBank Submission: KX803491
> BS20110.complete
GAAGTTATCAGTCGACATGTCGGATTTGGGGAAAGATGTGGCGAGCGAAG
AAGGCTCCAATGGAAGCAGGGAAACCATTTGGTACACCATTGGAGAGCTT
GTGGAAATGGTCGAGTGTCCAGGTTGTGGAATATCCATGGTATCGTTCAA
AAATCGCTTCGCCCACATCAAGAAGTGCTTCAGCATCAAGAGACGAGGTC
CTTTGTACAGGATTTATGGATATGCGGAGTGCAAGTGCGGCTTTCTTATT
GCAGACACGGAAAAAGCCCGGAAACTGCATTGTTGTTCGGGAAAACTTCG
CCCCTGCAAGCCAATCATACCAACTGAGCCGAAAGTCCCGGTGACAAAAC
ATGCTGAAGAACTAACATCAACTAAAAGGGAACAGGCTTTGCAGCCGTTG
ATTAGAAATTTTATCAGTCCCATCAAACAACAGGAGTTTCCATCTTTGGA
TATATCATATTCCAGTAAATATGATCCTAAACCAACATCGAGGCCACGCG
TCCGTAACTTTGATAGACCACACAGAAGTCAAGCTCCAAAGGAAGTCTGT
GTGTACTCCATAATTCGGAGGAATGGGGCTATCTCAGTGACAGGAAGATC
CATCGTTAGGTACCGGGGTGGCAACGAAAACCTTGCCATACTTAAAAGGC
GAGAATTAAAAATAAAATACGTATAAAAGCTTTCTAGACCAT
BS20110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30096-RB | 660 | CG30096-PB | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30096-RB | 1130 | CG30096-RB | 159..818 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16321127..16321514 | 676..289 | 1940 | 100 | Minus |
2R | 25286936 | 2R | 16321565..16321819 | 294..40 | 1260 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:40:26 has no hits.
BS20110.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:39 Download gff for
BS20110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30096-RB | 107..764 | 17..674 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:03 Download gff for
BS20110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30096-RB | 159..816 | 17..674 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:43 Download gff for
BS20110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30096-RB | 159..816 | 17..674 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:43 Download gff for
BS20110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16321129..16321513 | 290..674 | 100 | <- | Minus |
2R | 16321570..16321818 | 41..289 | 100 | <- | Minus |
2R | 16321873..16321896 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:03 Download gff for
BS20110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12208634..12209018 | 290..674 | 100 | <- | Minus |
arm_2R | 12209075..12209323 | 41..289 | 100 | <- | Minus |
arm_2R | 12209378..12209401 | 17..40 | 100 | | Minus |
BS20110.pep Sequence
Translation from 16 to 675
> BS20110.pep
MSDLGKDVASEEGSNGSRETIWYTIGELVEMVECPGCGISMVSFKNRFAH
IKKCFSIKRRGPLYRIYGYAECKCGFLIADTEKARKLHCCSGKLRPCKPI
IPTEPKVPVTKHAEELTSTKREQALQPLIRNFISPIKQQEFPSLDISYSS
KYDPKPTSRPRVRNFDRPHRSQAPKEVCVYSIIRRNGAISVTGRSIVRYR
GGNENLAILKRRELKIKYV*
BS20110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30096-PB | 219 | CG30096-PB | 1..219 | 1..219 | 1158 | 100 | Plus |