BS20112.complete Sequence
614 bp assembled on 2011-01-07
GenBank Submission: KX802541
> BS20112.complete
GAAGTTATCAGTCGACATGTTCGATAAAGAATTTCTTTTCCCAGGCCTTT
TGGTTGCAGTGGCCTTGGTGGTAGTATTACAAACACGCAGCAGATTGCAA
CAGGATTTGCAGGATATGCGATGGCGTCTGACGATACACGCTCTCACCGT
TCGAGATACGTTTGGGAATCCAGTGCAACTCGATACATTCGCCGGCCATG
TGTTGCTTATCGTCAACATTGCCTCCAAATGCGGACTTACTTTATCTCAG
TACAACGGTTTGCGCTATTTACTCGAGGAATATGAAGACCAGGGCTTGAG
AATTTTAAACTTTCCCTGTAACCAGTTTGGGGGTCAAATGCCCGAGTCCG
ATGGCCAGGAAATGTTGGATCACCTGCGCAGGGAGGGAGCCAACATAGGA
CACCTCTTTGCCAAGATAGATGTAAAGGGAGCTCAGGCAGATCCGCTGTA
CAAGCTCCTAACGCGCCACCAGCATGATATCGAATGGAATTTTGTCAAGT
TTCTGGTGGATCGAAAGGGAAACATCCACAAGAGATATGGCGCCGAACTG
GAACCAGTTGCCCTGACCGATGACATAGAGCTGCTGCTCGGCAGATGAAA
GCTTTCTAGACCAT
BS20112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15116-RA | 582 | CG15116-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15116-RA | 641 | CG15116-RA | 12..593 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19055279..19055648 | 598..229 | 1850 | 100 | Minus |
| 2R | 25286936 | 2R | 19055702..19055913 | 228..17 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:40:46 has no hits.
BS20112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:42 Download gff for
BS20112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15116-RA | 17..592 | 22..597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:07 Download gff for
BS20112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15116-RA | 17..592 | 22..597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:50 Download gff for
BS20112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15116-RA | 17..592 | 22..597 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:50 Download gff for
BS20112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19055702..19055908 | 22..228 | 100 | | Minus |
| 2R | 19055280..19055648 | 229..597 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:07 Download gff for
BS20112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14942785..14943153 | 229..597 | 100 | <- | Minus |
| arm_2R | 14943207..14943413 | 22..228 | 100 | | Minus |
BS20112.pep Sequence
Translation from 16 to 597
> BS20112.pep
MFDKEFLFPGLLVAVALVVVLQTRSRLQQDLQDMRWRLTIHALTVRDTFG
NPVQLDTFAGHVLLIVNIASKCGLTLSQYNGLRYLLEEYEDQGLRILNFP
CNQFGGQMPESDGQEMLDHLRREGANIGHLFAKIDVKGAQADPLYKLLTR
HQHDIEWNFVKFLVDRKGNIHKRYGAELEPVALTDDIELLLGR*
BS20112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15116-PA | 193 | CG15116-PA | 1..193 | 1..193 | 1007 | 100 | Plus |
| PHGPx-PA | 169 | CG12013-PA | 6..169 | 33..191 | 403 | 50.6 | Plus |
| PHGPx-PC | 198 | CG12013-PC | 35..198 | 33..191 | 403 | 50.6 | Plus |
| PHGPx-PD | 238 | CG12013-PD | 75..238 | 33..191 | 403 | 50.6 | Plus |
