Clone BS20115 Report

Search the DGRC for BS20115

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG34445-RA
Protein status:BS20115.pep: full length peptide match
Sequenced Size:437

Clone Sequence Records

BS20115.complete Sequence

437 bp assembled on 2011-01-07

GenBank Submission: KX805605

> BS20115.complete
GAAGTTATCAGTCGACATGACGACAACGCTGCCGGAGAAGGAAGCGGAAA
CGCAGCAGGAGATCAGGGAGCGGGAGGCCAAGGCTCTGGAGGACCGAAAG
GAGCGCAAGATCTACGAGAACTTTGCCACGCCCCTGGCAGGCACTTTTCT
CAACCTGCCACGCGAGCCCGTGGAGATCGAGTGCCCCGCCTGCGGAATCA
AGGATCTGAGTGTGGTGCAAAATGATCTGAAGTGGTGGGCCAGTGAACTA
AACCGCATTGTGGGATGTCTTTTTGTGACCTTCTGCTGCTGCTGCTGCTT
TAATTACTATGTGCCGTGCAAACAAACCGATCGAAGTCATTACTGCGGCA
ATTGCGGCTGTTACTTTGGACGTTCCATGAAGAGGAGGCAACCACTCAAA
TTGAAGGCAACCACCGCCTAGAAGCTTTCTAGACCAT

BS20115.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG34445-RA 405 CG34445-PA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG34445-RA 527 CG34445-RA 25..430 16..421 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22648193..22648454 277..16 1310 100 Minus
2R 25286936 2R 22647989..22648133 421..277 725 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:42:22 has no hits.

BS20115.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:56 Download gff for BS20115.complete
Subject Subject Range Query Range Percent Splice Strand
CG34445-RA 21..425 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:27 Download gff for BS20115.complete
Subject Subject Range Query Range Percent Splice Strand
CG34445-RA 26..430 17..421 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:25 Download gff for BS20115.complete
Subject Subject Range Query Range Percent Splice Strand
CG34445-RA 26..430 17..421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:25 Download gff for BS20115.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22647989..22648133 277..421 100 <- Minus
2R 22648194..22648453 17..276 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:27 Download gff for BS20115.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18535494..18535638 277..421 100 <- Minus
arm_2R 18535699..18535958 17..276 100   Minus

BS20115.pep Sequence

Translation from 16 to 420

> BS20115.pep
MTTTLPEKEAETQQEIREREAKALEDRKERKIYENFATPLAGTFLNLPRE
PVEIECPACGIKDLSVVQNDLKWWASELNRIVGCLFVTFCCCCCFNYYVP
CKQTDRSHYCGNCGCYFGRSMKRRQPLKLKATTA*

BS20115.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG34445-PA 134 CG34445-PA 1..134 1..134 744 100 Plus