BS20116.complete Sequence
527 bp assembled on 2011-01-07
GenBank Submission: KX801138
> BS20116.complete
GAAGTTATCAGTCGACATGAAGGTTCTGTTCGTGTGCATTGGCAACACAT
GCCGGTCACCAATGGCCGAGGCCATACTGAAGCATTTGGTAGTGAAACGG
AATCTGCAGGACTGGTATGTGGACAGTGCTGGCCTCAGGAGTTGGAACGT
TGGCCTGGAGCCCCAGGCACGTGGACAACAATTGTTAAAACAGCATGGTT
TGAAAACAAACCACTTGGGTCGTATGATAAGCGCTCAAGACTTCTATGAC
TTCGATTACATATTCGCCATGGACAATAGCAACCTATTGGAGCTTGAGCA
TATGGCTGCTTCTCTTACTCCCAGTCCGACATGCAAGATTCAATTGCTGG
GTAGCTATATTGGACGCAAGGAGGATGAGATCATCGAGGATCCATACTTT
ATTCAAGGCATGGGAGGCTTTAATGCTGCATATCTGCAGATTCTGGAAAG
CTGCGAACGATTTCTGCAACATTATAAATCGGATGACAAGGAGTTATCAT
TAGGAAGTTAAAAGCTTTCTAGACCAT
BS20116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31469-RA | 495 | CG31469-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31469-RA | 613 | CG31469-RA | 6..500 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13709668..13709857 | 230..41 | 935 | 99.5 | Minus |
| 3R | 32079331 | 3R | 13709441..13709615 | 400..226 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 13709272..13709382 | 511..401 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:42:39 has no hits.
BS20116.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:57 Download gff for
BS20116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31469-RA | 6..498 | 17..509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:29 Download gff for
BS20116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31469-RA | 6..498 | 17..509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:29 Download gff for
BS20116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31469-RA | 6..498 | 17..509 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:29 Download gff for
BS20116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13709441..13709614 | 227..400 | 100 | <- | Minus |
| 3R | 13709672..13709856 | 42..226 | 100 | <- | Minus |
| 3R | 13709910..13709934 | 17..41 | 100 | | Minus |
| 3R | 13709274..13709382 | 401..509 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:29 Download gff for
BS20116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9534996..9535104 | 401..509 | 100 | <- | Minus |
| arm_3R | 9535163..9535336 | 227..400 | 100 | <- | Minus |
| arm_3R | 9535394..9535578 | 42..226 | 100 | <- | Minus |
| arm_3R | 9535632..9535656 | 17..41 | 100 | | Minus |
BS20116.pep Sequence
Translation from 16 to 510
> BS20116.pep
MKVLFVCIGNTCRSPMAEAILKHLVVKRNLQDWYVDSAGLRSWNVGLEPQ
ARGQQLLKQHGLKTNHLGRMISAQDFYDFDYIFAMDNSNLLELEHMAASL
TPSPTCKIQLLGSYIGRKEDEIIEDPYFIQGMGGFNAAYLQILESCERFL
QHYKSDDKELSLGS*
BS20116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31469-PA | 164 | CG31469-PA | 1..164 | 1..164 | 864 | 100 | Plus |
| primo-2-PC | 164 | CG33747-PC | 10..156 | 3..151 | 324 | 42.7 | Plus |
| primo-1-PB | 155 | CG33748-PB | 4..150 | 2..151 | 318 | 41.3 | Plus |
| primo-1-PA | 155 | CG33748-PA | 4..150 | 2..151 | 318 | 41.3 | Plus |
| CG14297-PA | 250 | CG14297-PA | 5..166 | 2..164 | 305 | 40.5 | Plus |
