Clone BS20117 Report

Search the DGRC for BS20117

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptApf-RA
Protein status:BS20117.pep: full length peptide match
Sequenced Size:461

Clone Sequence Records

BS20117.complete Sequence

461 bp assembled on 2011-01-07

GenBank Submission: KX804705

> BS20117.complete
GAAGTTATCAGTCGACATGGAAAAGGCAGCTGGTTTTGTTATTTTTCGCC
GCCTTTGTGGGGAAATACAATACCTATTGCTGAAGGCTTCCTACGGCTCC
TTCCACTGGAGTTCTCCCAAGGGACATGTGGACCCAGGCGAGGATGATTT
TACCACTGCCCTGCGAGAAACGAAAGAGGAAGCCGGGTACGACGAGAAGG
ATCTGATCATATACAAGGACACTCCGCTGACCCTGAATTATCAGGTGCAA
GACAAGCCGAAGATTGTTATTTACTGGCTAGCGGAGCTGCGGAATCCCTG
CCAGGAGCCCATTCTCTCCGAGGAGCACACCGACCTCAAGTGGCTGCCCA
AGGAGGAGGCCAAGCAGTGCGTCGGCTTTAAGGATAACCAAGTCATGATC
GACAAGTTCCACCAAATGATTTTAGATCAAAACAAACCAATGTGAAAGCT
TTCTAGACCAT

BS20117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Apf-RA 429 CG31713-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Apf-RA 555 CG31713-RA 51..482 15..446 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9938251..9938511 446..186 1305 100 Minus
2L 23513712 2L 9938568..9938740 187..15 865 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:42:52 has no hits.

BS20117.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:59 Download gff for BS20117.complete
Subject Subject Range Query Range Percent Splice Strand
Apf-RA 50..477 17..444 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:31 Download gff for BS20117.complete
Subject Subject Range Query Range Percent Splice Strand
Apf-RA 53..480 17..444 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:32 Download gff for BS20117.complete
Subject Subject Range Query Range Percent Splice Strand
Apf-RA 53..480 17..444 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:32 Download gff for BS20117.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9938253..9938510 187..444 100 <- Minus
2L 9938565..9938738 17..186 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:31 Download gff for BS20117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9938253..9938510 187..444 100 <- Minus
arm_2L 9938565..9938738 17..186 97   Minus

BS20117.pep Sequence

Translation from 16 to 444

> BS20117.pep
MEKAAGFVIFRRLCGEIQYLLLKASYGSFHWSSPKGHVDPGEDDFTTALR
ETKEEAGYDEKDLIIYKDTPLTLNYQVQDKPKIVIYWLAELRNPCQEPIL
SEEHTDLKWLPKEEAKQCVGFKDNQVMIDKFHQMILDQNKPM*

BS20117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Apf-PA 142 CG31713-PA 1..142 1..142 767 100 Plus