Clone BS20119 Report

Search the DGRC for BS20119

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG31007-RA
Protein status:BS20119.pep: full length peptide match
Sequenced Size:563

Clone Sequence Records

BS20119.complete Sequence

563 bp assembled on 2011-01-07

GenBank Submission: KX801988

> BS20119.complete
GAAGTTATCAGTCGACATGCCCCGCCAACGTTCGGAAGGGCCGCGATCCA
CAGGATCTATGCGGCGCCAAAGCAGCCGGAGCAGCCATGTCTTCGCCACA
AAGCCGTCTCGTGGGAGCAGCAAGGATCTGCCGGCTGTGCAGCAGCCCAA
GAAGGAATCCCTGCCAGCTGCAGCTCCTGCTGCCTCGGCAGCCACCTCCA
CAGAGACAAAAGGTCCTAGCACAGCAGATAGGTTCAAGGACATGGCCACC
ACGGCGGCTGGCGTGGCAGCAGGATCAGCTGTGGGCCACGCTGTGGGCGC
AGGACTCACGGGAATGTTCCAGGGACGTGGTCAGGCAGCCCCGGCCAAGG
AGCAGCCTCAACAGGAGGGATCCTTGGCAGCTTCAGCTTCGCAATCAGTA
CCGAAACCTCAACTAGTGGAGGATGGTCCCTGCGCCTTCGAGCTGAGGCA
GTTCCTCAAGTGCACCGAGGACAACAGCAGTGATCTCTCCGTTTGCAAGG
AGTTTAACGAGGCAATGCAGCAGTGTCGGCGGCGCTATAATGTCTGAAAG
CTTTCTAGACCAT

BS20119.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31007-RA 531 CG31007-PA 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31007-RA 758 CG31007-RA 41..571 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30991887..30992417 547..17 2655 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:43:17 has no hits.

BS20119.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:02 Download gff for BS20119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31007-RA 41..570 17..546 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:35 Download gff for BS20119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31007-RA 41..570 17..546 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:40 Download gff for BS20119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31007-RA 41..570 17..546 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:40 Download gff for BS20119.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30991888..30992417 17..546 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:35 Download gff for BS20119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26817610..26818139 17..546 100   Minus

BS20119.pep Sequence

Translation from 16 to 546

> BS20119.pep
MPRQRSEGPRSTGSMRRQSSRSSHVFATKPSRGSSKDLPAVQQPKKESLP
AAAPAASAATSTETKGPSTADRFKDMATTAAGVAAGSAVGHAVGAGLTGM
FQGRGQAAPAKEQPQQEGSLAASASQSVPKPQLVEDGPCAFELRQFLKCT
EDNSSDLSVCKEFNEAMQQCRRRYNV*

BS20119.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31007-PA 176 CG31007-PA 1..176 1..176 894 100 Plus
CG31008-PA 114 CG31008-PA 32..114 73..176 255 51 Plus
CG5010-PA 170 CG5010-PA 42..169 48..176 232 37.4 Plus
CG5010-PB 122 CG5010-PB 13..121 67..176 215 40 Plus