BS20120.complete Sequence
515 bp assembled on 2011-01-07
GenBank Submission: KX804694
> BS20120.complete
GAAGTTATCAGTCGACATGCAGTATACTCAGCTCCTGAGAGTTTTGTGCT
CCATCGTGATCATATCCTATATGGCAGTCCATGTTCTCGGGGACATAAAA
TGCAATGTGTGTCAACCAAATCATGTCAAGTGCCTGAACGAGACCCACTT
TAGTTTTTGCCTCGACGCCGTTTCGTCGGATCAGGTTATCCAGTGTCCCG
ACGGCCAGGTTTGCACCAGCCTCCTGAAGATCTGCCTGCCCAAGGGATCG
ACTCCAGCTTCCTGCACTCCAGATGCCGAAATATCGTGTCCTCCTTGCAG
TGGAGCAGGTCTATTCGTCTGCACTAGCCGCACCACCTTCCAAATGTGTG
ATGAAGGCAAGCTCATCGGCCAAGTAACGAAGTGCAAGGATAACACTTTC
TGCTCCATGAAGTCGAAAAAGTTTTGCGTAGATCAGTGTGAAATAACGAA
ATCTCAAAATGGATTCGAGTGCGACAGAGAGTCCCCCTTGGATGTATAAA
AGCTTTCTAGACCAT
BS20120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32023-RA | 483 | CG32023-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
| CG13311-RA | 462 | CG13311-PA | 292..393 | 314..415 | 180 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32023-RA | 525 | CG32023-RA | 5..488 | 17..500 | 2420 | 100 | Plus |
| CG13311-RA | 568 | CG13311-RA | 328..429 | 314..415 | 180 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8803639..8804093 | 500..46 | 2275 | 100 | Minus |
| 3L | 28110227 | 3L | 8801679..8801780 | 415..314 | 180 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:43:21 has no hits.
BS20120.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:04 Download gff for
BS20120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32023-RA | 5..485 | 17..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:37 Download gff for
BS20120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32023-RA | 5..485 | 17..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:43 Download gff for
BS20120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32023-RA | 5..485 | 17..497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:43 Download gff for
BS20120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8803642..8804092 | 47..497 | 100 | <- | Minus |
| 3L | 8804149..8804178 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:37 Download gff for
BS20120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8796742..8797192 | 47..497 | 100 | <- | Minus |
| arm_3L | 8797249..8797278 | 17..46 | 100 | | Minus |
BS20120.pep Sequence
Translation from 16 to 498
> BS20120.pep
MQYTQLLRVLCSIVIISYMAVHVLGDIKCNVCQPNHVKCLNETHFSFCLD
AVSSDQVIQCPDGQVCTSLLKICLPKGSTPASCTPDAEISCPPCSGAGLF
VCTSRTTFQMCDEGKLIGQVTKCKDNTFCSMKSKKFCVDQCEITKSQNGF
ECDRESPLDV*
BS20120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32023-PA | 160 | CG32023-PA | 1..160 | 1..160 | 877 | 100 | Plus |
| CG13311-PA | 153 | CG13311-PA | 1..153 | 1..158 | 491 | 59.5 | Plus |
| CG14958-PA | 145 | CG14958-PA | 1..132 | 6..138 | 210 | 34.6 | Plus |
| CG34427-PB | 269 | CG34427-PB | 14..143 | 13..140 | 194 | 36.6 | Plus |
| CG13309-PA | 229 | CG13309-PA | 4..124 | 15..137 | 156 | 31.1 | Plus |
