BS20121.complete Sequence
1046 bp assembled on 2011-01-07
GenBank Submission: KX801850
> BS20121.complete
GAAGTTATCAGTCGACATGCACGAACTCATTGGCAAATACAGCCATTCGG
ACATGGACATGCTGAAGGATCAGCTGAAGCGTGGGGGCTACATGGGCGCC
CTTGGTCCGCCCACGCCCGGCACATCCGCCCCCTCGCCCTTCCTGATGCC
CGCCGAATTCTACAAAAGCCTGCTCGCCAGCGCCGTTCTGCAACAGCAAC
AGCAGCACAAGTTCTACGCCGGCACGCCCTCACCCAGTCCCGCCCCCAGT
TTGTCACCCACCTCAGGTCGCCACTTGCTGTTTTCCACGGCAGCTGCGGC
AACCGCTTGTGCTCCGGAGAATGGTCACGTGAAGACGGAGCTCGAAGAGC
AGGACCAGCAGAACGGGATGCCGGAAACCGTCGGACATGAGGAGCAGAAA
CCCATCATCGAAGAGAACCCAACGCCGAATAAGCCGCACAACAACAACGG
TTACTCGTGGTCCACCGGCAACAACAACGAGGTTGTCAGTCATAGCAGCA
ACGGCCACACCAACAACCACCCAACAACACCACCCACTCCGCCCAACGAG
GCCAGCGCCACCCAAGCGACTTCAGTGTCCGCAATTAATTTGAATCAAGC
CCAACCCGCATCACAGACGCGTTCAAACTTTGGCAGCTCCATAAAGTCAC
CACCATCAGAACCGGACGCGGTCACTGCTGCCACGTGCAAAAGTCAGGAG
AATAACTCCGGCCAGAACCCCACCCCCAACTCCCTCTCCGATCACAACCC
GGCTCACAACCTTAACTCGAATTCAACGGCCGCTGCCGTGGCCGCCGCTG
CCGCCGCCGCCGCCGCTGCCAACATGCCGATCGGCGGCGTCCAGGGTCAG
AATCCCACCCAGGGCCTGGTCCACTGGATGAGTGCCGTGATGGCCGAGCA
CATGACCGGCCAGACGCACCACGATCCTGGCGCCGTAGGCATGCACTACA
TGTGGAACGGGAACGTTGACGTGAGTATCAACTGGATAACTGGATTCACG
GGGGCGGGCAAAATTCGTGGGGCTTGTTAAAAGCTTTCTAGACCAT
BS20121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rn-RF | 2784 | CG42277-PF | 1..954 | 17..970 | 4770 | 100 | Plus |
| rn-RG | 2859 | CG42277-PG | 472..1011 | 431..970 | 2700 | 100 | Plus |
| rn-RE | 2841 | CG42277-PE | 472..1011 | 431..970 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rn-RF | 4270 | CG42277-RF | 61..1015 | 16..970 | 4775 | 100 | Plus |
| rn-RG | 5014 | CG42277-RG | 1220..1759 | 431..970 | 2700 | 100 | Plus |
| rn-RE | 5014 | CG42277-RE | 1220..1759 | 431..970 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7300577..7301176 | 1030..431 | 3000 | 100 | Minus |
| 3R | 32079331 | 3R | 7301759..7302173 | 430..16 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:43:32 has no hits.
BS20121.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:05 Download gff for
BS20121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RD | 62..1073 | 17..1028 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:39 Download gff for
BS20121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RF | 62..1015 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:47 Download gff for
BS20121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RF | 62..1015 | 17..970 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:47 Download gff for
BS20121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7300579..7301176 | 431..1028 | 100 | <- | Minus |
| 3R | 7301759..7302172 | 17..430 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:39 Download gff for
BS20121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3126301..3126898 | 431..1028 | 100 | <- | Minus |
| arm_3R | 3127481..3127894 | 17..430 | 100 | | Minus |
BS20121.pep Sequence
Translation from 16 to 1029
> BS20121.pep
MHELIGKYSHSDMDMLKDQLKRGGYMGALGPPTPGTSAPSPFLMPAEFYK
SLLASAVLQQQQQHKFYAGTPSPSPAPSLSPTSGRHLLFSTAAAATACAP
ENGHVKTELEEQDQQNGMPETVGHEEQKPIIEENPTPNKPHNNNGYSWST
GNNNEVVSHSSNGHTNNHPTTPPTPPNEASATQATSVSAINLNQAQPASQ
TRSNFGSSIKSPPSEPDAVTAATCKSQENNSGQNPTPNSLSDHNPAHNLN
SNSTAAAVAAAAAAAAAANMPIGGVQGQNPTQGLVHWMSAVMAEHMTGQT
HHDPGAVGMHYMWNGNVDVSINWITGFTGAGKIRGAC*
BS20121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rn-PF | 927 | CG42277-PF | 1..318 | 1..318 | 1702 | 100 | Plus |
| rn-PE | 946 | CG42277-PE | 48..337 | 24..318 | 975 | 66.7 | Plus |
| rn-PG | 952 | CG42277-PG | 48..337 | 24..318 | 975 | 66.7 | Plus |
