BS20122.complete Sequence
500 bp assembled on 2011-01-07
GenBank Submission: KX803991
> BS20122.complete
GAAGTTATCAGTCGACATGGAGCTCTCGTTGGATGAACCGCAATGCGCAT
CCTTCTTTTGCATCCTGGGTGCCGTGTGCGCCATTGTCTTTTCGACATTG
GGAGCCGCCTACGGAACAGCGAAGGCTTCTGTGGGAATCTCTTCGATGTC
AATCAAGCATCCGCAGCTGATCATGAAGGCGATTGTTCCAGTGGTTATGG
CTGGCATTATAGCCATTTATGGACTGGTGATCGCGGTCCTGCTTGCTGGA
TCACTTAGCAGCCCCTATAGCGCCTACAAGGGTTTCCTAAACCTCAGTGC
TGGACTGGCGGTGGGAGTCTCTGGGATGGGGGCTGGAATTGCTATTGGCG
TGGTGGGCGAAGCTGGAGTCCGTGCATCTGCCCAGCAGCCAAAACTCTTT
GTGGCCATCATTTTAATATTGATATTTGCCGAGGTCTTGGGTCTGTATGG
TCTCATAGTGGCCATTTATTTGTTTTCCAAGTAGAAGCTTTCTAGACCAT
BS20122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-4-RA | 468 | CG9013-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Vha16-3-RB | 477 | CG32090-PB | 320..461 | 327..468 | 215 | 76.8 | Plus |
Vha16-3-RA | 477 | CG32090-PA | 320..461 | 327..468 | 215 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-4-RA | 567 | CG9013-RA | 47..514 | 17..484 | 2340 | 100 | Plus |
Vha16-3-RB | 633 | CG32090-RB | 388..529 | 327..468 | 215 | 76.8 | Plus |
Vha16-3-RA | 587 | CG32090-RA | 342..483 | 327..468 | 215 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16947711..16948178 | 484..17 | 2340 | 100 | Minus |
3L | 28110227 | 3L | 11473727..11473868 | 327..468 | 215 | 76.8 | Plus |
Blast to na_te.dros performed 2014-11-26 15:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 8569..8614 | 483..438 | 104 | 69.6 | Minus |
BS20122.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:51 Download gff for
BS20122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15614-RA | 2004..2471 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:19 Download gff for
BS20122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-4-RA | 47..514 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:14 Download gff for
BS20122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-4-RA | 47..514 | 17..484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:14 Download gff for
BS20122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16947711..16948178 | 17..484 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:19 Download gff for
BS20122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12835216..12835683 | 17..484 | 100 | | Minus |
BS20122.pep Sequence
Translation from 16 to 483
> BS20122.pep
MELSLDEPQCASFFCILGAVCAIVFSTLGAAYGTAKASVGISSMSIKHPQ
LIMKAIVPVVMAGIIAIYGLVIAVLLAGSLSSPYSAYKGFLNLSAGLAVG
VSGMGAGIAIGVVGEAGVRASAQQPKLFVAIILILIFAEVLGLYGLIVAI
YLFSK*
BS20122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-4-PA | 155 | CG9013-PA | 1..155 | 1..155 | 748 | 100 | Plus |
Vha16-1-PB | 159 | CG3161-PB | 4..159 | 2..155 | 536 | 67.9 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 4..159 | 2..155 | 536 | 67.9 | Plus |
Vha16-1-PD | 159 | CG3161-PD | 4..159 | 2..155 | 536 | 67.9 | Plus |
Vha16-1-PC | 159 | CG3161-PC | 4..159 | 2..155 | 536 | 67.9 | Plus |