Clone BS20122 Report

Search the DGRC for BS20122

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptVha16-4-RA
Protein status:BS20122.pep: full length peptide match
Sequenced Size:500

Clone Sequence Records

BS20122.complete Sequence

500 bp assembled on 2011-01-07

GenBank Submission: KX803991

> BS20122.complete
GAAGTTATCAGTCGACATGGAGCTCTCGTTGGATGAACCGCAATGCGCAT
CCTTCTTTTGCATCCTGGGTGCCGTGTGCGCCATTGTCTTTTCGACATTG
GGAGCCGCCTACGGAACAGCGAAGGCTTCTGTGGGAATCTCTTCGATGTC
AATCAAGCATCCGCAGCTGATCATGAAGGCGATTGTTCCAGTGGTTATGG
CTGGCATTATAGCCATTTATGGACTGGTGATCGCGGTCCTGCTTGCTGGA
TCACTTAGCAGCCCCTATAGCGCCTACAAGGGTTTCCTAAACCTCAGTGC
TGGACTGGCGGTGGGAGTCTCTGGGATGGGGGCTGGAATTGCTATTGGCG
TGGTGGGCGAAGCTGGAGTCCGTGCATCTGCCCAGCAGCCAAAACTCTTT
GTGGCCATCATTTTAATATTGATATTTGCCGAGGTCTTGGGTCTGTATGG
TCTCATAGTGGCCATTTATTTGTTTTCCAAGTAGAAGCTTTCTAGACCAT

BS20122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-4-RA 468 CG9013-PA 1..468 17..484 2340 100 Plus
Vha16-3-RB 477 CG32090-PB 320..461 327..468 215 76.8 Plus
Vha16-3-RA 477 CG32090-PA 320..461 327..468 215 76.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-4-RA 567 CG9013-RA 47..514 17..484 2340 100 Plus
Vha16-3-RB 633 CG32090-RB 388..529 327..468 215 76.8 Plus
Vha16-3-RA 587 CG32090-RA 342..483 327..468 215 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16947711..16948178 484..17 2340 100 Minus
3L 28110227 3L 11473727..11473868 327..468 215 76.8 Plus
Blast to na_te.dros performed 2014-11-26 15:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 8569..8614 483..438 104 69.6 Minus

BS20122.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:51 Download gff for BS20122.complete
Subject Subject Range Query Range Percent Splice Strand
CG15614-RA 2004..2471 17..484 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:19 Download gff for BS20122.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-4-RA 47..514 17..484 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:14 Download gff for BS20122.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-4-RA 47..514 17..484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:14 Download gff for BS20122.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16947711..16948178 17..484 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:19 Download gff for BS20122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12835216..12835683 17..484 100   Minus

BS20122.pep Sequence

Translation from 16 to 483

> BS20122.pep
MELSLDEPQCASFFCILGAVCAIVFSTLGAAYGTAKASVGISSMSIKHPQ
LIMKAIVPVVMAGIIAIYGLVIAVLLAGSLSSPYSAYKGFLNLSAGLAVG
VSGMGAGIAIGVVGEAGVRASAQQPKLFVAIILILIFAEVLGLYGLIVAI
YLFSK*

BS20122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-4-PA 155 CG9013-PA 1..155 1..155 748 100 Plus
Vha16-1-PB 159 CG3161-PB 4..159 2..155 536 67.9 Plus
Vha16-1-PA 159 CG3161-PA 4..159 2..155 536 67.9 Plus
Vha16-1-PD 159 CG3161-PD 4..159 2..155 536 67.9 Plus
Vha16-1-PC 159 CG3161-PC 4..159 2..155 536 67.9 Plus