BS20123.complete Sequence
713 bp assembled on 2011-01-07
GenBank Submission: KX804703
> BS20123.complete
GAAGTTATCAGTCGACATGTTGACCACTCACCATCTGCACCACCTGCACC
ACCATCGCGGCAGTACGGCCGTGGAGCTGGACAAGATCACCAACCTGAAT
ACGCTCATCGTGGAGATCAACAGCCATGTGGCACTGTTCCGGGATATGCT
GATACACGTCGGCCAGGCCAAGGATTGCCCCGAGCTCCGGGAGAAGATCC
GCAAGTTGCGTCGCACCTGCGTGGAGGCACTCAAGCACACCGCCCAGATC
CTGATGCCTCAAGTCAAGAGCGCCATGGCCGACGGCATCCTCACCGACAA
CCCGCATTTGGTGCTCCTGTTCTACATGGCCCAGTTGTTCCTACGTGAAC
TTGTGAAAAGCTATCGCCTCATACAAGTCGTGCCAATGGATATGTCCGGC
TATTATGAGAACCGAGCCGGTCCCTCGAACCTGGGCAATGTCATCAGCCA
GATATTGTTGTGCAAACAGTTCACGCCCGACTTCAACGAGGAGGAATTAT
GCAGCATCACCAAGGATTCGCAGGACATTGCCGTGCTTCTGGCCGAGATG
CAGGAGTATATGCCGCAGCACGAGGCGTACTTGGAACGCAACGCGGCGCT
GGACACAACTGGACCTTGGCAGGCCAAGCGGCGTCAGAACTACATCTGCA
AGAACATGAGCCTGCTCTGCTGCGTCTCCAGGCCGAACTATCTCTGAAAG
CTTTCTAGACCAT
BS20123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34351-RD | 702 | CG34351-PD | 1..685 | 17..701 | 3410 | 99.9 | Plus |
| CG34351-RC | 681 | CG34351-PC | 1..681 | 17..697 | 3405 | 100 | Plus |
| CG14340-RA | 795 | CG14340-PA | 480..584 | 421..525 | 180 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34351-RD | 3223 | CG34351-RD | 529..1215 | 15..701 | 3420 | 99.9 | Plus |
| CG34351-RC | 3223 | CG34351-RC | 529..1215 | 15..701 | 3420 | 99.9 | Plus |
| CG14340-RA | 1030 | CG14340-RA | 527..631 | 421..525 | 180 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4719804..4719981 | 407..584 | 890 | 100 | Plus |
| 2L | 23513712 | 2L | 4712288..4712455 | 103..270 | 840 | 100 | Plus |
| 2L | 23513712 | 2L | 4717723..4717861 | 269..407 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 4720340..4720457 | 584..701 | 575 | 99.2 | Plus |
| 2L | 23513712 | 2L | 4705735..4705823 | 15..103 | 445 | 100 | Plus |
| 2L | 23513712 | 2L | 1113575..1113679 | 421..525 | 180 | 78.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:42:02 has no hits.
BS20123.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:52 Download gff for
BS20123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34351-RC | 536..1210 | 22..696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:21 Download gff for
BS20123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34351-RC | 536..1210 | 22..696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:18 Download gff for
BS20123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34351-RC | 536..1210 | 22..696 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:18 Download gff for
BS20123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4719805..4719981 | 408..584 | 100 | -> | Plus |
| 2L | 4720341..4720452 | 585..696 | 100 | | Plus |
| 2L | 4705742..4705823 | 22..103 | 100 | -> | Plus |
| 2L | 4712289..4712455 | 104..270 | 100 | -> | Plus |
| 2L | 4717725..4717861 | 271..407 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:21 Download gff for
BS20123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4705742..4705823 | 22..103 | 100 | -> | Plus |
| arm_2L | 4712289..4712455 | 104..270 | 100 | -> | Plus |
| arm_2L | 4717725..4717861 | 271..407 | 100 | -> | Plus |
| arm_2L | 4719805..4719981 | 408..584 | 100 | -> | Plus |
| arm_2L | 4720341..4720452 | 585..696 | 100 | | Plus |
BS20123.pep Sequence
Translation from 16 to 696
> BS20123.pep
MLTTHHLHHLHHHRGSTAVELDKITNLNTLIVEINSHVALFRDMLIHVGQ
AKDCPELREKIRKLRRTCVEALKHTAQILMPQVKSAMADGILTDNPHLVL
LFYMAQLFLRELVKSYRLIQVVPMDMSGYYENRAGPSNLGNVISQILLCK
QFTPDFNEEELCSITKDSQDIAVLLAEMQEYMPQHEAYLERNAALDTTGP
WQAKRRQNYICKNMSLLCCVSRPNYL*
BS20123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34351-PC | 226 | CG34351-PC | 1..226 | 1..226 | 1185 | 100 | Plus |
| CG34351-PD | 233 | CG34351-PD | 1..226 | 1..226 | 1185 | 100 | Plus |
| CG14340-PA | 264 | CG14340-PA | 56..261 | 30..225 | 494 | 49.5 | Plus |
