Clone BS20131 Report

Search the DGRC for BS20131

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG15649-RA
Protein status:BS20131.pep: full length peptide match
Sequenced Size:392

Clone Sequence Records

BS20131.complete Sequence

392 bp assembled on 2011-01-07

GenBank Submission: KX801329

> BS20131.complete
GAAGTTATCAGTCGACATGTTACACCTGAGATTTGTCTTTATGGCCGCTT
TACCGCTGCTGCTGTTGCTTCTACTTCAGTTTAGTCCACCTGCAGATGGC
TTTATCATTCGACTGATTACGGAGACACTGCAGAATAACGTGGCTGGTGA
GCCGGTTCTTCACGAGCGGACTTCTTGGGACTTTGATCCGGAGGCGGCCA
AGAGGGCCAGATCGCTGTACTACGAGAAGAACGGATTCCGCTCGTCCAAA
TTCATCGAGCGACTGGGCGTTGGTCTGGATGGGCGGCACGAGGAGCGGCG
GGCGGAGCAAGGACATCGCGATGTGGGACGACTGAATGGGGAACACAATG
TGAACTATCCGCCTCCACCGGCTTAGAAGCTTTCTAGACCAT

BS20131.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15649-RB 360 CG15649-PB 1..360 17..376 1800 100 Plus
CG15649-RA 360 CG15649-PA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15649-RB 766 CG15649-RB 78..437 17..376 1800 100 Plus
CG15649-RA 462 CG15649-RA 78..437 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20973458..20973634 226..50 885 100 Minus
2R 25286936 2R 20973245..20973396 376..225 760 100 Minus
Blast to na_te.dros performed 2014-11-26 15:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2806..2877 81..8 104 62.2 Minus

BS20131.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:28 Download gff for BS20131.complete
Subject Subject Range Query Range Percent Splice Strand
CG15649-RB 63..417 22..376 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:45 Download gff for BS20131.complete
Subject Subject Range Query Range Percent Splice Strand
CG15649-RA 83..437 22..376 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:09 Download gff for BS20131.complete
Subject Subject Range Query Range Percent Splice Strand
CG15649-RA 83..437 22..376 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:09 Download gff for BS20131.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20973245..20973394 227..376 100 <- Minus
2R 20973458..20973634 50..226 100 <- Minus
2R 20973908..20973935 22..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:45 Download gff for BS20131.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16860750..16860899 227..376 100 <- Minus
arm_2R 16860963..16861139 50..226 100 <- Minus
arm_2R 16861413..16861440 22..49 100   Minus

BS20131.pep Sequence

Translation from 16 to 375

> BS20131.pep
MLHLRFVFMAALPLLLLLLLQFSPPADGFIIRLITETLQNNVAGEPVLHE
RTSWDFDPEAAKRARSLYYEKNGFRSSKFIERLGVGLDGRHEERRAEQGH
RDVGRLNGEHNVNYPPPPA*

BS20131.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15649-PB 119 CG15649-PB 1..119 1..119 626 100 Plus
CG15649-PA 119 CG15649-PA 1..119 1..119 626 100 Plus