BS20133.complete Sequence
827 bp assembled on 2011-01-07
GenBank Submission: KX806288
> BS20133.complete
GAAGTTATCAGTCGACATGACGCCTGCAATCGTTCTGCTGACTTTTTTAG
TAATCCTAACCCTGGGATCTTATGGATATTCGCAGCTATTGGATTCAAAA
TGCATTGCATTGTTTCGAATAAGAGTAATTGGTGGTCAGAATGCTCGAAG
GACTCCATGGATGGCTTACTTGATACGAGATAACAGATTCGCATGTGGCG
GCTCACTGATTGCCTACCGCTTTGTTCTAACCGCTGCCCATTGTACGAAA
ATCAACGACAACTTATTTGTTAGATTGGGTGAATACGATTCGTCGAGGAC
AACGGATGGACAGACTAGAAGCTACAGAGTTGTTTCAATATATCGTCATA
AAAACTATATAGATTTTCGAAACCATGATATTGCTGTGCTCAAACTGGAT
CGCCAAGTCGTCTACGATGCTTATATACGACCAATTTGCATTCTTTTAAA
TTCCGGCTTGCAGTCCCTTGCAAACAGCATACAGAATTTTACTTTAACTG
GCTGGGGTCAGATGGCCCACTATTACAAGATGCCAACTACACTGCAGGAA
ATGTCCCTGCGCCGTGTTAGAAATGAGTATTGCGGTGTTCCGAGTCTTTC
CATATGTTGCTGGAATCCCGTGCAGTACGCCTGCTTTGGAGATTCAGGCG
GTCCATTGGGGTCACTTGTGAAATACGGACATAAAACCATATATGTTCAG
TTTGGAGTAACCAACTCCGTGACGGGCAATTGTGATGGCTACAGCTCATA
TTTGGATCTCATGAGCTATATGCCCTGGCTTTACCAAACCTTGTTAAGAA
ACTGGGTCTAAAAGCTTTCTAGACCAT
BS20133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30098-RA | 795 | CG30098-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30098-RA | 809 | CG30098-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16354237..16354630 | 812..419 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 16355013..16355215 | 219..17 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 16354694..16354848 | 419..265 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 16354906..16354951 | 264..219 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:39:14 has no hits.
BS20133.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:31 Download gff for
BS20133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30098-RA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:48 Download gff for
BS20133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30098-RA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:17 Download gff for
BS20133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30098-RA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:17 Download gff for
BS20133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16355014..16355215 | 17..218 | 100 | | Minus |
| 2R | 16354240..16354629 | 420..809 | 100 | <- | Minus |
| 2R | 16354694..16354848 | 265..419 | 100 | <- | Minus |
| 2R | 16354906..16354951 | 219..264 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:48 Download gff for
BS20133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12242519..12242720 | 17..218 | 100 | | Minus |
| arm_2R | 12241745..12242134 | 420..809 | 100 | <- | Minus |
| arm_2R | 12242199..12242353 | 265..419 | 100 | <- | Minus |
| arm_2R | 12242411..12242456 | 219..264 | 100 | <- | Minus |
BS20133.pep Sequence
Translation from 16 to 810
> BS20133.pep
MTPAIVLLTFLVILTLGSYGYSQLLDSKCIALFRIRVIGGQNARRTPWMA
YLIRDNRFACGGSLIAYRFVLTAAHCTKINDNLFVRLGEYDSSRTTDGQT
RSYRVVSIYRHKNYIDFRNHDIAVLKLDRQVVYDAYIRPICILLNSGLQS
LANSIQNFTLTGWGQMAHYYKMPTTLQEMSLRRVRNEYCGVPSLSICCWN
PVQYACFGDSGGPLGSLVKYGHKTIYVQFGVTNSVTGNCDGYSSYLDLMS
YMPWLYQTLLRNWV*
BS20133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30098-PA | 264 | CG30098-PA | 1..264 | 1..264 | 1414 | 100 | Plus |
| CG33459-PA | 284 | CG33459-PA | 7..277 | 7..260 | 429 | 37.9 | Plus |
| CG30090-PA | 291 | CG30090-PA | 1..280 | 1..262 | 394 | 35.2 | Plus |
| CG33458-PA | 281 | CG33458-PA | 8..278 | 11..262 | 386 | 35.7 | Plus |
| CG43335-PA | 281 | CG43335-PA | 6..272 | 10..255 | 360 | 35.7 | Plus |
