Clone BS20139 Report

Search the DGRC for BS20139

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG32202-RA
Protein status:BS20139.pep: full length peptide match
Sequenced Size:458

Clone Sequence Records

BS20139.complete Sequence

458 bp assembled on 2011-01-07

GenBank Submission: KX803684

> BS20139.complete
GAAGTTATCAGTCGACATGTTGCTAAATAAGAAAGAACTCATGTACAAAC
AGCTGGTGGAAAAACTGTATGACAGGTGCCAAAGGATTCAGGCGGAAAAT
GAGCGATGTGTGATGAGAGTAAATGGGATCAAAAAGATAGTAAGAAGGCG
CAATCATGACGTGGAGCTTCTAAAACGGCGACTAGATAAGCACGGAGACG
ACTGGCGATCCGTTCCCATGGAGGCTCCACATCCCAAAGGGAAAACCGAG
CAGAAGCGTCGAGGACCGAAGCCCAAAAACAAGCAGGCGGCGGATGAAAC
AGGAGCACCCGGGTCTGAGCCTGGACCCAATACTCCAGCTGCCCGGAAAC
CCCGAAAGCAAAAAGCCAAACAGGCACCCATCAATCCCAATCCAGTCATT
GCACCACCGCATCAACAACCTCAACCTCCACTGTTGACCTGAAAGCTTTC
TAGACCAT

BS20139.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32202-RA 426 CG32202-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32202-RA 616 CG32202-RA 94..519 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18682437..18682763 116..442 1635 100 Plus
3L 28110227 3L 18682277..18682377 17..117 505 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:40:16 has no hits.

BS20139.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:38 Download gff for BS20139.complete
Subject Subject Range Query Range Percent Splice Strand
CG32202-RA 49..468 22..441 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:01 Download gff for BS20139.complete
Subject Subject Range Query Range Percent Splice Strand
CG32202-RA 99..518 22..441 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:39 Download gff for BS20139.complete
Subject Subject Range Query Range Percent Splice Strand
CG32202-RA 99..518 22..441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:39 Download gff for BS20139.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18682282..18682377 22..117 100 -> Plus
3L 18682439..18682762 118..441 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:01 Download gff for BS20139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18675382..18675477 22..117 100 -> Plus
arm_3L 18675539..18675862 118..441 100   Plus

BS20139.pep Sequence

Translation from 16 to 441

> BS20139.pep
MLLNKKELMYKQLVEKLYDRCQRIQAENERCVMRVNGIKKIVRRRNHDVE
LLKRRLDKHGDDWRSVPMEAPHPKGKTEQKRRGPKPKNKQAADETGAPGS
EPGPNTPAARKPRKQKAKQAPINPNPVIAPPHQQPQPPLLT*

BS20139.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32202-PA 141 CG32202-PA 1..141 1..141 758 100 Plus