Clone BS20140 Report

Search the DGRC for BS20140

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG10581-RA
Protein status:BS20140.pep: full length peptide match
Sequenced Size:602

Clone Sequence Records

BS20140.complete Sequence

602 bp assembled on 2011-01-07

GenBank Submission: KX801145

> BS20140.complete
GAAGTTATCAGTCGACATGAAGAACCAAAAAAATATAACCATTATACTAA
CTGGGCCACCAGGAGTGGGTAAAACTACACTGGTCCACAAAATATGCTCG
GCTCTGCAGGATAGAGGACGCATTCTTCAAGGATTCTACACAGAGGAAAT
GCGAGGTGAGGGCACCAGCCAAAGAATCGGCTTCGACGTGGTCACGTTAG
CCGGAAAACGAGCAATCCTATCTCGCAAGAATCCCGGGGACCAGCTGCGA
CGACCCAAAGTGGGAGAGTATTCGGTGTTTGTGCAGGACTTCGACAGTCT
CGCTCTGCCAGTACTTGGCACACAGGATTCCCAACCAGAGCCGGATCTCC
TGGTCGTGGATGAAGTGGGCAAAATGGAGCTGCTTAGCAAGCGATTTGAG
TCGGCCATGGCTGATCTCCTGAAGAAAAAGCGGGCCCTATTGGTCACCAT
ACCCGAGAAATCAACATTGGCTTTGGTGGAGCAGCTGAGAAAGTCAGCAG
GATCCAAGATTTACCAGGTGACCAAATTCAATAGGAACGCCTTGGCTGGA
GAGATTACAGAAGAGATTACAAAAGCACTTCTTTAAAAGCTTTCTAGACC
AT

BS20140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10581-RA 570 CG10581-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10581-RA 587 CG10581-RA 8..581 13..586 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21033560..21034086 586..60 2635 100 Minus
3L 28110227 3L 21034146..21034196 63..13 255 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:44:02 has no hits.

BS20140.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:08 Download gff for BS20140.complete
Subject Subject Range Query Range Percent Splice Strand
CG10581-RA 12..579 17..584 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:45 Download gff for BS20140.complete
Subject Subject Range Query Range Percent Splice Strand
CG10581-RA 12..579 17..584 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:58 Download gff for BS20140.complete
Subject Subject Range Query Range Percent Splice Strand
CG10581-RA 12..579 17..584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:58 Download gff for BS20140.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21033562..21034083 63..584 100 <- Minus
3L 21034147..21034192 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:45 Download gff for BS20140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21027247..21027292 17..62 100   Minus
arm_3L 21026662..21027183 63..584 100 <- Minus

BS20140.pep Sequence

Translation from 16 to 585

> BS20140.pep
MKNQKNITIILTGPPGVGKTTLVHKICSALQDRGRILQGFYTEEMRGEGT
SQRIGFDVVTLAGKRAILSRKNPGDQLRRPKVGEYSVFVQDFDSLALPVL
GTQDSQPEPDLLVVDEVGKMELLSKRFESAMADLLKKKRALLVTIPEKST
LALVEQLRKSAGSKIYQVTKFNRNALAGEITEEITKALL*

BS20140.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10581-PA 189 CG10581-PA 1..189 1..189 937 100 Plus