Clone BS20142 Report

Search the DGRC for BS20142

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG14130-RA
Protein status:BS20142.pep: full length peptide match
Sequenced Size:800

Clone Sequence Records

BS20142.complete Sequence

800 bp assembled on 2011-01-07

GenBank Submission: KX802075

> BS20142.complete
GAAGTTATCAGTCGACATGATTATCCAGAACAGAAGTCCTCTTATAGGCC
ACATTTTGAGACGGTGCCATCGCCAAGCGGTGGAAAGCAACGCTATAAAA
GCCAATTTAACAGCATATTTTGGAAAATGGCCCGAAACGGAGCAGAAGGA
GTTTCGCCAGCATATGCGCATCATCACGGATTTCATTAGTGAGCCAGAGG
AACAGCAGCTGCACGAGGAGATCGAGCCCTATATGAGCCGTCTGCGCTAC
GAGTTCGATCACTGGGACGATGCCATACACGGTTTTCGGGAGACGGAGCG
AAAGAAGTGGTTCCCTAAAAACAGAGAGATCCTGGAGCGCGTGCGCCAAG
TCGCCTTCGATGGAGCAGTTATGCCCTATGTCCACATCCTAGATCTTGCA
CCCGATGGCGTTATCAAGCCCCATGTGGATAGCACGAGATACTGCGGCAA
CACCATCTCTGGAATCAGCCTACTTAGCGACAGTGTGATGCGACTTGTGC
GCACGGATGAGCAGCGGTACCAACAGCAATCGTCGGGAACTGCAACGGAT
CCGAATTCCCAGGGGTCAGAACCCGATGCAGCCTATCGCCATCAACCGGA
GGCGTCTCTAAAGAACAACTTCTACGCTGACATCCTGTTGCCGCGCCGCT
CCTTGTACATAATGAGCCACACGGCTCGCTACAAATTCACACACGAGATA
CTAGCTAAGGAGCACTCCCAGTTTCAGGGTGCGCTGGTGCCCAGGACACG
TCGCATTTCCATCATTTGTCGCAACGAACCCTGAAAGCTTTCTAGACCAT

BS20142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14130-RA 768 CG14130-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14130-RA 1067 CG14130-RA 57..825 17..785 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11816123..11816468 440..785 1730 100 Plus
3L 28110227 3L 11815626..11815823 75..272 990 100 Plus
3L 28110227 3L 11815891..11816058 272..439 840 100 Plus
3L 28110227 3L 11815500..11815560 17..77 305 100 Plus
3L 28110227 3L 11837713..11837764 626..575 185 90.4 Minus
Blast to na_te.dros performed on 2014-11-26 15:44:22 has no hits.

BS20142.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:11 Download gff for BS20142.complete
Subject Subject Range Query Range Percent Splice Strand
CG14130-RA 22..788 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:51 Download gff for BS20142.complete
Subject Subject Range Query Range Percent Splice Strand
CG14130-RA 22..788 17..783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:05 Download gff for BS20142.complete
Subject Subject Range Query Range Percent Splice Strand
CG14130-RA 57..823 17..783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:05 Download gff for BS20142.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11815500..11815560 17..77 100 -> Plus
3L 11815629..11815822 78..271 100 -> Plus
3L 11815891..11816058 272..439 100 -> Plus
3L 11816123..11816466 440..783 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:51 Download gff for BS20142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11808600..11808660 17..77 100 -> Plus
arm_3L 11808729..11808922 78..271 100 -> Plus
arm_3L 11808991..11809158 272..439 100 -> Plus
arm_3L 11809223..11809566 440..783 100   Plus

BS20142.pep Sequence

Translation from 16 to 783

> BS20142.pep
MIIQNRSPLIGHILRRCHRQAVESNAIKANLTAYFGKWPETEQKEFRQHM
RIITDFISEPEEQQLHEEIEPYMSRLRYEFDHWDDAIHGFRETERKKWFP
KNREILERVRQVAFDGAVMPYVHILDLAPDGVIKPHVDSTRYCGNTISGI
SLLSDSVMRLVRTDEQRYQQQSSGTATDPNSQGSEPDAAYRHQPEASLKN
NFYADILLPRRSLYIMSHTARYKFTHEILAKEHSQFQGALVPRTRRISII
CRNEP*

BS20142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14130-PA 255 CG14130-PA 1..255 1..255 1349 100 Plus