Clone BS20146 Report

Search the DGRC for BS20146

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG14135-RB
Protein status:BS20146.pep: full length peptide match
Sequenced Size:800

Clone Sequence Records

BS20146.complete Sequence

800 bp assembled on 2011-01-07

GenBank Submission: KX804539

> BS20146.complete
GAAGTTATCAGTCGACATGCGCTGCGCTGTAAAAAATTGCGGAAATAATA
ATCGTATTGCCAATAGAACGAAATGGAGATACTTTCACTTCCCCAAAGAA
AAGCCAAACCTCCAAAGGTGGATAGATTTTTGCCAGCGAGATAATATAAA
CCCCACAACTGCCTGTATTTGCAATGAGCACTTTGCACCCAATGACTTTG
AGCGAAATATGCAATACGAATTGGGCTTTAGCCGCAAAAATCCAACAAAA
CTAAAGCCCGGCTCATTTCCGAGTGTGAATGGACCCCAAAAGTTGGCGAA
GGAACTGCGAGGAAGTATCAAAAGGGGCTCCAAAAGTGTTCCCTTAGCTG
GGTCTACGAAAATGTCCAATATAGGCTTTGATCCACACCATGCAGGAACG
CAATCCTCGGAAGGCCACGAAACCATAGAAATCCAACTCTGTGGTTTTAA
TACAGATATTGAGGGCTTCGAAGAAGCCGAAGATGACGACTGTCCTTCAG
GTCCCCGGCTCGTGGAAGTAGAAATATTGGATCCTCTTAACCCGCAGTCA
AATGCCAAGGATCATGTGGAGATAATCGATTCGGAAGGCGACAGTTATGT
GAAGCACTTGGAGCTCGAAATATGCTCCTTAAAGCGTGAGGTATTTTTCC
TCAAAGACGAATACCAGAAGATAAAGGCTGAAATGCGTAATCTCAAGGAC
ACAATAAAAAGATCAGAGGAAGAACTCGCAGAAAAACAACTCCAAGGTGT
TGTTAAAAGCAGAAAAAGGAAATCTCAGTTTTGAAAGCTTTCTAGACCAT

BS20146.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14135-RB 768 CG14135-PB 1..768 17..784 3840 100 Plus
CG14135-RC 780 CG14135-PC 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14135-RB 937 CG14135-RB 48..817 17..786 3850 100 Plus
CG14135-RC 1064 CG14135-RC 124..873 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11691895..11692359 157..621 2310 99.8 Plus
3L 28110227 3L 11691694..11691838 17..161 725 100 Plus
3L 28110227 3L 11692422..11692566 622..766 725 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:39:25 has no hits.

BS20146.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:30:32 Download gff for BS20146.complete
Subject Subject Range Query Range Percent Splice Strand
CG14135-RB 48..814 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:51 Download gff for BS20146.complete
Subject Subject Range Query Range Percent Splice Strand
CG14135-RB 48..814 17..783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:22 Download gff for BS20146.complete
Subject Subject Range Query Range Percent Splice Strand
CG14135-RB 48..814 17..783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:22 Download gff for BS20146.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11691694..11691838 17..161 100 -> Plus
3L 11691900..11692359 162..621 100 -> Plus
3L 11692422..11692566 622..766 100 -> Plus
3L 11692618..11692634 767..783 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:51 Download gff for BS20146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11684794..11684938 17..161 100 -> Plus
arm_3L 11685000..11685459 162..621 100 -> Plus
arm_3L 11685522..11685666 622..766 100 -> Plus
arm_3L 11685718..11685734 767..783 100   Plus

BS20146.pep Sequence

Translation from 16 to 783

> BS20146.pep
MRCAVKNCGNNNRIANRTKWRYFHFPKEKPNLQRWIDFCQRDNINPTTAC
ICNEHFAPNDFERNMQYELGFSRKNPTKLKPGSFPSVNGPQKLAKELRGS
IKRGSKSVPLAGSTKMSNIGFDPHHAGTQSSEGHETIEIQLCGFNTDIEG
FEEAEDDDCPSGPRLVEVEILDPLNPQSNAKDHVEIIDSEGDSYVKHLEL
EICSLKREVFFLKDEYQKIKAEMRNLKDTIKRSEEELAEKQLQGVVKSRK
RKSQF*

BS20146.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14135-PB 255 CG14135-PB 1..255 1..255 1365 100 Plus
CG14135-PC 259 CG14135-PC 1..250 1..250 1340 100 Plus