BS20160.complete Sequence
1493 bp assembled on 2011-01-07
GenBank Submission: KX805040
> BS20160.complete
GAAGTTATCAGTCGACATGCCTTTCGTTCCCGTTGAAACCCCCAAGTGCC
CCGCGTGCGGCAAGTCGGTCTACGCTGCCGAGGAGCGCGTTGCCGGAGGC
TACAAATTCCACAAGACCTGCTTCAAGTGCAGCATGTGCAACAAGGCCCT
GGACTCGACCAACTGCACGGAGCACGAGAAGGAGCTTTTCTGCAAAAACT
GCCATGGTCGCAAATACGGTCCCAAGGGATACGGTTTCGGTGGTGGTGCC
GGCTGCCTGTCCACGGACACTGGCGCCCACTTAAACAGAGAATTCGTTCC
GCCCAAGATTCCCCCAAAAGCACCCGACGGGCTGGGCTGCCCACGGTGTG
GCATATATGTGTATGCCGCCGAGCAGATGCTGGCCAGAGGAAAGGGTTAC
CATCGAAGGTGCTTTAAGTGCGTGCAATGCAACAAGACTCTAGACTCAAC
TCTTCACTGTGATGGTCCGGACAAGGACATTTACTGTAGAGGATGTTATG
CTCAGAAGTTTGGGGCCAGGGGTTACGGGCACATCGGCATTTCGTCCTTG
GGGTTGATGTCCGACATCAGGGATAGCGAGTGGCAAAGCGACATGGCTCC
CAAAGCCTCCATCATAAATGTGGAGCAAATCCAGGCGCCAATCGGAGAAG
GATGCCCACGTTGTGGCGGCGTAGTATTCGCCGCGGAACAAGTTCTCTCC
AAGGGAAGGAGCTGGCACCGGAAGTGCTTCAAGTGTCGGGACTGCACCAA
AACTCTGGACTCCATTATCGCGTGCGATGGTCCGGACAATGAGGTCTACT
GCAAGACTTGCTATGGCAAGAAGTGGGGACCCCATGGCTACGGATTCGCC
TGTGGATCCAGTTTCCTGCAAACCGACGGCATTACTGAGGAGAACTTGGC
ATCCGAACGACCCTTTGTGGCTCCGGACACCACTTCGATCATGGCTCCGG
ACGGCGAGGGATGTCCCCGATGTGGCGGAGCGGTCTTTGCGGCCGAGCTG
CAGCTGTCCAAGGGGAAGATGTACCACAGGAAGTGCTTCAACTGCGCCAG
GTGCACCCGACCCCTGGACTCGGTGCTCGCCTGTGACGGACCGGATGACA
ATATCTATTGCAAGCTCTGCTACGCGAAGCTCTTTGGCCCCAAAGGCGTC
GGGTACGGACACACGCCCACCCTGGTGTCCACCAACTACGAGTACACGCC
CAGCTGCTGGGGAACCATCGATCGCAACGGACAAAAGTCGGAGAACGGGT
GTCCGCGATGCGGATTCATGGTCTTCGCCGCGGAACAGGTGAAGAGCGCG
AAGAACGTGTGGCACAAGCTCTGTTTCTACTGCATGGAGTGCCGGAAATA
CCTGGACTCGACCAATCTGAACGACGGACCCGATGGCGGCATCTATTGCC
GATCGTGCTACGCCAAGTTCTATGGGCCAAAGGGTGTGGGCTACGGAATC
GGAGCTGGCACACTGACAATGGCTTAAAAGCTTTCTAGACCAT
BS20160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlp60A-RC | 1461 | CG42309-PC | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| Mlp60A-RB | 1461 | CG42309-PB | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| Mlp60A-RE | 279 | CG42309-PE | 1..275 | 17..291 | 1375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlp60A-RC | 2468 | CG42309-RC | 493..1953 | 17..1477 | 7305 | 100 | Plus |
| Mlp60A-RB | 2058 | CG42309-RB | 83..1543 | 17..1477 | 7305 | 100 | Plus |
| Mlp60A-RE | 440 | CG42309-RE | 83..357 | 17..291 | 1375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24077058..24077378 | 886..1206 | 1605 | 100 | Plus |
| 2R | 25286936 | 2R | 24076652..24076950 | 587..885 | 1495 | 100 | Plus |
| 2R | 25286936 | 2R | 24077437..24077708 | 1206..1477 | 1360 | 100 | Plus |
| 2R | 25286936 | 2R | 24075449..24075608 | 132..291 | 800 | 100 | Plus |
| 3R | 32079331 | 3R | 7114303..7115096 | 1446..653 | 620 | 72.5 | Minus |
| 2R | 25286936 | 2R | 24075223..24075338 | 17..132 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 24076181..24076284 | 292..395 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 24076344..24076443 | 393..492 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 24076501..24076599 | 490..588 | 495 | 100 | Plus |
| 3R | 32079331 | 3R | 7115504..7115734 | 269..39 | 420 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:44:59 has no hits.
BS20160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:17 Download gff for
BS20160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlp60A-RB | 82..1540 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:00 Download gff for
BS20160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlp60A-RB | 83..1541 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:16 Download gff for
BS20160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlp60A-RB | 83..1541 | 17..1475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:16 Download gff for
BS20160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24076503..24076599 | 492..588 | 100 | -> | Plus |
| 2R | 24075223..24075337 | 17..131 | 100 | -> | Plus |
| 2R | 24075449..24075608 | 132..291 | 100 | -> | Plus |
| 2R | 24076181..24076283 | 292..394 | 100 | -> | Plus |
| 2R | 24076346..24076442 | 395..491 | 100 | -> | Plus |
| 2R | 24076654..24076950 | 589..885 | 100 | -> | Plus |
| 2R | 24077058..24077378 | 886..1206 | 100 | -> | Plus |
| 2R | 24077438..24077706 | 1207..1475 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:00 Download gff for
BS20160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19964177..19964473 | 589..885 | 100 | -> | Plus |
| arm_2R | 19964581..19964901 | 886..1206 | 100 | -> | Plus |
| arm_2R | 19962746..19962860 | 17..131 | 100 | -> | Plus |
| arm_2R | 19962972..19963131 | 132..291 | 100 | -> | Plus |
| arm_2R | 19963704..19963806 | 292..394 | 100 | -> | Plus |
| arm_2R | 19963869..19963965 | 395..491 | 100 | -> | Plus |
| arm_2R | 19964026..19964122 | 492..588 | 100 | -> | Plus |
| arm_2R | 19964961..19965229 | 1207..1475 | 100 | | Plus |
BS20160.pep Sequence
Translation from 16 to 1476
> BS20160.pep
MPFVPVETPKCPACGKSVYAAEERVAGGYKFHKTCFKCSMCNKALDSTNC
TEHEKELFCKNCHGRKYGPKGYGFGGGAGCLSTDTGAHLNREFVPPKIPP
KAPDGLGCPRCGIYVYAAEQMLARGKGYHRRCFKCVQCNKTLDSTLHCDG
PDKDIYCRGCYAQKFGARGYGHIGISSLGLMSDIRDSEWQSDMAPKASII
NVEQIQAPIGEGCPRCGGVVFAAEQVLSKGRSWHRKCFKCRDCTKTLDSI
IACDGPDNEVYCKTCYGKKWGPHGYGFACGSSFLQTDGITEENLASERPF
VAPDTTSIMAPDGEGCPRCGGAVFAAELQLSKGKMYHRKCFNCARCTRPL
DSVLACDGPDDNIYCKLCYAKLFGPKGVGYGHTPTLVSTNYEYTPSCWGT
IDRNGQKSENGCPRCGFMVFAAEQVKSAKNVWHKLCFYCMECRKYLDSTN
LNDGPDGGIYCRSCYAKFYGPKGVGYGIGAGTLTMA*
BS20160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlp60A-PC | 486 | CG42309-PC | 1..486 | 1..486 | 2767 | 100 | Plus |
| Mlp60A-PB | 486 | CG42309-PB | 1..486 | 1..486 | 2767 | 100 | Plus |
| Mlp84B-PC | 495 | CG1019-PC | 4..493 | 3..484 | 1859 | 67 | Plus |
| Mlp84B-PB | 495 | CG1019-PB | 4..493 | 3..484 | 1859 | 67 | Plus |
| Mlp84B-PA | 495 | CG1019-PA | 4..493 | 3..484 | 1859 | 67 | Plus |
| Mlp84B-PC | 495 | CG1019-PC | 222..494 | 11..286 | 693 | 46.2 | Plus |
| Mlp84B-PB | 495 | CG1019-PB | 222..494 | 11..286 | 693 | 46.2 | Plus |
| Mlp84B-PC | 495 | CG1019-PC | 12..84 | 412..485 | 202 | 50 | Plus |
| Mlp84B-PB | 495 | CG1019-PB | 12..84 | 412..485 | 202 | 50 | Plus |
