Clone BS20162 Report

Search the DGRC for BS20162

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG14708-RA
Protein status:BS20162.pep: full length peptide match
Sequenced Size:650

Clone Sequence Records

BS20162.complete Sequence

650 bp assembled on 2011-01-07

GenBank Submission: KX802261

> BS20162.complete
GAAGTTATCAGTCGACATGGCCGAGCAGCATTATAATGCAAATGATTTGG
CTTCCGATCCAAATTCGCGTAAATTGAAGTTTGCCGGCATTTGCAAACTA
AATAATAACGAGCTGTCGAGTCTCTACAATATCGACAAGTTGACCGACGA
GGAGCTGGCGTCCGTGAATCTGGATAGGAGCTCCCTGATCGATGACTATC
GTCTACTGCACGAGGTGTCGCAGATGAAGCAAATAGAGAATGAAGCAAAT
AATATCCCTGCTGCTGCTCCAGCAGGACAACCAAAATCCAAGGAGTTGCA
TGAGCAATTCGTAAAAGAGATGGAGAAGTACCTTACCAATAAGAAGTACA
CATTTCCGATGCTCAACCATTTGATCAAGTTAATGAGTTGGGAAGTGGAG
CCGGAGACCATTTTCAACGAAAAGGCGTTTCAGATTGATGTCAATTACCA
TGAGGACGAGGAGGTAATGCAGCTGGAGCCCAATGAGCGTCTGTTTCGTC
GCCTCAAGTCCATCTACGATCATCTGGAGGACATGTTCATCAACGGCAAT
CGCAGAACGGCCTCCGACCTGGTCTTCACCGCAATTATCCGTTTGGTCGA
CCGCTCTAATGTGGCAAAATATAAAATCATATAAAAGCTTTCTAGACCAT

BS20162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14708-RA 618 CG14708-PA 1..618 17..634 3090 100 Plus
CG15375-RB 702 CG15375-PB 43..224 65..246 385 80.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14708-RA 725 CG14708-RA 45..662 17..634 3090 100 Plus
CG15375-RB 1232 CG15375-RB 133..314 65..246 385 80.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11554189..11554806 17..634 3090 100 Plus
X 23542271 X 4101450..4101631 65..246 385 80.8 Plus
Blast to na_te.dros performed on 2014-11-26 15:46:49 has no hits.

BS20162.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:31 Download gff for BS20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG14708-RA 45..660 17..632 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:25 Download gff for BS20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG14708-RA 45..660 17..632 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:58 Download gff for BS20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG14708-RA 45..660 17..632 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:58 Download gff for BS20162.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11554189..11554804 17..632 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:25 Download gff for BS20162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7379911..7380526 17..632 100   Plus

BS20162.pep Sequence

Translation from 16 to 633

> BS20162.pep
MAEQHYNANDLASDPNSRKLKFAGICKLNNNELSSLYNIDKLTDEELASV
NLDRSSLIDDYRLLHEVSQMKQIENEANNIPAAAPAGQPKSKELHEQFVK
EMEKYLTNKKYTFPMLNHLIKLMSWEVEPETIFNEKAFQIDVNYHEDEEV
MQLEPNERLFRRLKSIYDHLEDMFINGNRRTASDLVFTAIIRLVDRSNVA
KYKII*

BS20162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14708-PA 205 CG14708-PA 1..205 1..205 1054 100 Plus
CG15375-PB 233 CG15375-PB 2..167 4..193 371 46.8 Plus