BS20163.complete Sequence
641 bp assembled on 2011-01-07
GenBank Submission: KX800868
> BS20163.complete
GAAGTTATCAGTCGACATGGAAAAGAATCTACCGGCATCCATTTCGAAGA
ACAAGAGATTCGAATCGACGATGATGAGTTCTCCCGTGCCAAGTTTTGCC
AAGTCCAATGGGATGAAAAAGAAGACTACGACCTTTTCACGATTCATCCG
CACCGATCGTGCCGCAGGGGGCTTGACCAATGGGGTGAAAAAGAAGACTG
TATCCGTTTCGCGATTCAGCCGCGTCCATCGTGTCGCAGAGGACCTGACC
CGTGAATTGGCCGGCATGTCGTTGAAAAAACAGGCTGTGCAACCGCGTCG
TCGTTATTCTTTCACCAATGAGTTCCCGGATGATCCACCAAAGCCAGCTC
CCAACCGTCGCTGCTCGCTTGTCCGCCGCAACTCAATTAACCTCCCAATT
GAGTCCAATTTTGATATGTCCGTGCTGATGGATGATGATGATGAGGAGGA
GGAGGATGATGAGATGATGATGGCGAAGGAGGAGGATGATGAGATGATGA
TGGCGAAGGAGGAGGAGGATGAAGTACAGGATCTAAATATGACCAGTGGC
TCCATCAACCCAGCTACATCGACCTCGAAAGGCGCCATCCCGAAGCCGCC
CAAAAATTTCGGCTTTACCTTCTAGAAGCTTTCTAGACCAT
BS20163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14810-RA | 609 | CG14810-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
| CG14810-RB | 606 | CG14810-PB | 1..606 | 17..625 | 2965 | 99.5 | Plus |
| CG14811-RB | 714 | CG14811-PB | 13..270 | 17..277 | 625 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14810-RA | 720 | CG14810-RA | 64..674 | 17..627 | 3055 | 100 | Plus |
| CG14810-RB | 717 | CG14810-RB | 64..671 | 17..627 | 2975 | 99.5 | Plus |
| CG14811-RB | 849 | CG14811-RB | 117..374 | 17..277 | 625 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1819541..1820122 | 627..46 | 2910 | 100 | Minus |
| X | 23542271 | X | 1821944..1822174 | 277..47 | 615 | 84.4 | Minus |
| X | 23542271 | X | 1821606..1821768 | 450..288 | 530 | 88.3 | Minus |
| X | 23542271 | X | 1821498..1821615 | 627..510 | 380 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:46:58 has no hits.
BS20163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:32 Download gff for
BS20163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14810-RA | 64..672 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:28 Download gff for
BS20163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14810-RA | 64..672 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:01 Download gff for
BS20163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14810-RA | 64..672 | 17..625 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:01 Download gff for
BS20163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1819543..1820121 | 47..625 | 100 | <- | Minus |
| X | 1820183..1820212 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:28 Download gff for
BS20163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1713576..1714154 | 47..625 | 100 | <- | Minus |
| arm_X | 1714216..1714245 | 17..46 | 100 | | Minus |
BS20163.pep Sequence
Translation from 16 to 624
> BS20163.pep
MEKNLPASISKNKRFESTMMSSPVPSFAKSNGMKKKTTTFSRFIRTDRAA
GGLTNGVKKKTVSVSRFSRVHRVAEDLTRELAGMSLKKQAVQPRRRYSFT
NEFPDDPPKPAPNRRCSLVRRNSINLPIESNFDMSVLMDDDDEEEEDDEM
MMAKEEDDEMMMAKEEEDEVQDLNMTSGSINPATSTSKGAIPKPPKNFGF
TF*
BS20163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14810-PA | 202 | CG14810-PA | 1..202 | 1..202 | 1035 | 100 | Plus |
| CG14810-PB | 201 | CG14810-PB | 1..201 | 1..202 | 1018 | 99.5 | Plus |
| CG14811-PB | 237 | CG14811-PB | 5..237 | 1..202 | 487 | 48.2 | Plus |
