BS20167.complete Sequence
584 bp assembled on 2011-01-07
GenBank Submission: KX804937
> BS20167.complete
GAAGTTATCAGTCGACATGCCTAACTGGAATCAAATACAGTCCCAACTGA
GAAGCTCCAACAATCCCGTCGTTTTCTTCGACATTGCCGTAGGCACAACG
GAAATCGGACGAATGATATTCGAACTCTTTGCGGACACAGTGCCCCGCAC
GGCGGAAAACTTCCGGCAGTTCTGCACGGGCGAGTACCGACCGGATGGCG
TTCCCATTGGCTACAAAGGCGCCAGTTTCCATCGGGTGATCAAGGACTTC
ATGATCCAGGGCGGCGACTTTGTGCAGGGCGACGGCACCGGCGTGACCAG
CATATACGGCAACACCTTCGGCGACGAGAACTTTACCCTGAAGCACGACT
CGCCCGGCCTCCTTTCCATGGCAAACAGTGGCAAGGAGACGAACGGCTGC
CAATTCTTTATCACCTGCGCCAAGTGCAACTTTTTAGACGGAAAGCACGT
GGTGTTCGGTCGGGTTCTGGATGGACTGCTCATCATGCGCAAGATCGAGA
ACGTGCCCACGGGCCCCAATAACAAGCCGAAGCTCCCAGTGACCATTTCG
CAGTGCGGGCAAATGTAGAAGCTTTCTAGACCAT
BS20167.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17266-RB | 552 | CG17266-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
| CG17266-RA | 552 | CG17266-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
| CG2852-RD | 618 | CG2852-PD | 214..420 | 209..415 | 225 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17266-RB | 712 | CG17266-RB | 116..667 | 17..568 | 2760 | 100 | Plus |
| CG17266-RA | 908 | CG17266-RA | 312..863 | 17..568 | 2760 | 100 | Plus |
| CG2852-RD | 1177 | CG2852-RD | 287..493 | 209..415 | 225 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6675073..6675541 | 568..100 | 2345 | 100 | Minus |
| 2R | 25286936 | 2R | 6675606..6675690 | 101..17 | 425 | 100 | Minus |
| 2R | 25286936 | 2R | 22645330..22645535 | 415..210 | 220 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:47:23 has no hits.
BS20167.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:37 Download gff for
BS20167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17266-RA | 271..822 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:33 Download gff for
BS20167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17266-RA | 312..863 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:10 Download gff for
BS20167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17266-RA | 312..863 | 17..568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:10 Download gff for
BS20167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6675073..6675540 | 101..568 | 100 | <- | Minus |
| 2R | 6675607..6675690 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:33 Download gff for
BS20167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2562578..2563045 | 101..568 | 100 | <- | Minus |
| arm_2R | 2563112..2563195 | 17..100 | 100 | | Minus |
BS20167.pep Sequence
Translation from 16 to 567
> BS20167.pep
MPNWNQIQSQLRSSNNPVVFFDIAVGTTEIGRMIFELFADTVPRTAENFR
QFCTGEYRPDGVPIGYKGASFHRVIKDFMIQGGDFVQGDGTGVTSIYGNT
FGDENFTLKHDSPGLLSMANSGKETNGCQFFITCAKCNFLDGKHVVFGRV
LDGLLIMRKIENVPTGPNNKPKLPVTISQCGQM*
BS20167.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17266-PB | 183 | CG17266-PB | 1..183 | 1..183 | 985 | 100 | Plus |
| CG17266-PA | 183 | CG17266-PA | 1..183 | 1..183 | 985 | 100 | Plus |
| CG2852-PD | 205 | CG2852-PD | 31..190 | 19..183 | 454 | 53.9 | Plus |
| CG2852-PA | 205 | CG2852-PA | 31..190 | 19..183 | 454 | 53.9 | Plus |
| CG7768-PB | 164 | CG7768-PB | 4..164 | 17..183 | 443 | 53.3 | Plus |
