BS20172.complete Sequence
506 bp assembled on 2011-01-07
GenBank Submission: KX801099
> BS20172.complete
GAAGTTATCAGTCGACATGTGCGCTTGCCCTTGTTCAGGAAGAAGTCTAC
CACCTCAGAGCAACAACCCTGATTCTTGCCCAGCTCCTGGCTCACGGGGC
GGTCCAGGTGCTGGTGGAGGTGCCCCTGGTGCCGGTGGAGGCGGCCCAGG
TGGTCGTGGAGGGGGCCCGCCCCAAAAGCGTGGAACGTGTGGCCCCAAAC
CTTGCGGCGGACAGCAGTGCAATAAATGCGGTAAGGGAGGCCCTGGAGGA
AGAGGTGGCCCTGGAGGAAAAGGTGGTGGCCCTGGAGGAAGAAATGGCCC
TGGAGGTAGTGGTGGTCCCGGAGGCAGAAATGCTCCCAATGGCGGTGGTG
GAGGCGGAGGAGGACCTTTTGGGCTGAGTGCCCCACCAAACAATCGCGGA
CCCAAGGCTCTGGGACTGGCTGCTCTGCTCTTTGCCGTCGGCGTCTACCT
TACATTAAAAATGGTTATTGTGGCCAGTGAAATTGGATGAAAGCTTTCTA
GACCAT
BS20172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31415-RA | 474 | CG31415-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31415-RA | 720 | CG31415-RA | 132..607 | 15..490 | 2380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9744074..9744549 | 15..490 | 2380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:46:28 has no hits.
BS20172.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:28 Download gff for
BS20172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31415-RA | 134..606 | 17..489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:20 Download gff for
BS20172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31415-RA | 134..606 | 17..489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:51 Download gff for
BS20172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31415-RA | 134..606 | 17..489 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:51 Download gff for
BS20172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9744076..9744548 | 17..489 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:20 Download gff for
BS20172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5569798..5570270 | 17..489 | 100 | | Plus |
BS20172.pep Sequence
Translation from 16 to 489
> BS20172.pep
MCACPCSGRSLPPQSNNPDSCPAPGSRGGPGAGGGAPGAGGGGPGGRGGG
PPQKRGTCGPKPCGGQQCNKCGKGGPGGRGGPGGKGGGPGGRNGPGGSGG
PGGRNAPNGGGGGGGGPFGLSAPPNNRGPKALGLAALLFAVGVYLTLKMV
IVASEIG*
BS20172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31415-PA | 157 | CG31415-PA | 1..157 | 1..157 | 898 | 100 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 326..438 | 14..133 | 224 | 45.5 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 326..438 | 14..133 | 224 | 45.5 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 265..377 | 25..133 | 222 | 46.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 265..377 | 25..133 | 222 | 46.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 428..554 | 18..133 | 220 | 43.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 460..565 | 23..133 | 219 | 46.9 | Plus |
| lcs-PA | 145 | CG12794-PA | 21..102 | 22..127 | 218 | 49.5 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 367..492 | 23..133 | 217 | 46.5 | Plus |
| lcs-PA | 145 | CG12794-PA | 19..92 | 14..103 | 211 | 53.3 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 367..473 | 23..133 | 211 | 49.5 | Plus |
| CG10918-PA | 183 | CG10918-PA | 23..114 | 25..130 | 210 | 49.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 397..497 | 23..123 | 209 | 50.5 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 296..401 | 23..123 | 208 | 48.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 296..401 | 23..123 | 208 | 48.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 430..530 | 23..123 | 207 | 47.2 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 428..553 | 18..128 | 206 | 44.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 353..452 | 25..119 | 203 | 50.5 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 353..452 | 25..119 | 203 | 50.5 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 286..407 | 25..133 | 195 | 44.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 286..407 | 25..133 | 195 | 44.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 463..562 | 23..119 | 192 | 48.6 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 371..473 | 22..119 | 190 | 46.7 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 490..600 | 23..128 | 187 | 44.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 207..336 | 7..123 | 186 | 40 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 242..342 | 24..119 | 186 | 46.2 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 207..336 | 7..123 | 186 | 40 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 242..342 | 24..119 | 186 | 46.2 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 234..334 | 22..128 | 184 | 44.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 234..334 | 22..128 | 184 | 44.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 26..131 | 18..133 | 179 | 41.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 26..131 | 18..133 | 179 | 41.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 482..589 | 23..128 | 176 | 43 | Plus |
| lcs-PA | 145 | CG12794-PA | 25..82 | 72..133 | 165 | 58.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 480..587 | 12..116 | 153 | 40.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 491..598 | 12..116 | 153 | 40.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 516..591 | 24..114 | 146 | 44 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 527..602 | 24..114 | 146 | 44 | Plus |
