BS20176.complete Sequence
614 bp assembled on 2011-01-07
GenBank Submission: KX802328
> BS20176.complete
GAAGTTATCAGTCGACATGGAAATGGATTACTATCTGCCAGTGTATAACG
GATCAAATTCGGTGGACGTGCCGGGGCTGATTGAAAGTCTCAAGCTGAAG
GAAACCAGTATATCGCCAATCGTGCTGGATCGCTATCCGCCGTACTCCCC
GTTCTATGGCGTGATGGGCGTCGTATTCTCCAGTGTGCTGACCTCCGCTG
GAGCGGCCTACGGAACTGCTGTTTCCGGAACTGGAATCGCCGCCACAGCG
GTGATGCGTCCCGAGCTGGTGATGAAGTCCATCATTCCGGTGGTCATGGC
GGGCATCATTGCCATATACGGTCTGGTGGTATCCGTGCTCCTATCTGGGG
AACTAGCGCCTGCTCCCAAATACTCGCTGCCCACCGGCTATGTACACCTG
GCCGCTGGACTTTCGGTGGGATTTGCTGGACTGGCTGCCGGATATGCAGT
GGGTGAAGTCGGCGAAGTGGGCGTGCGGCACATTGCCCTGCAGCCACGCC
TCTTTATCGGCATGATCCTGATCCTTATTTTCGCCGAGGTGCTCGGTCTC
TACGGCCTGATCATTGGGATTTATTTGTACACGGTCAACATTAAGTAGAA
GCTTTCTAGACCAT
BS20176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha16-5-RA | 582 | CG6737-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
| Vha16-3-RB | 477 | CG32090-PB | 283..470 | 395..582 | 280 | 76.6 | Plus |
| Vha16-3-RA | 477 | CG32090-PA | 283..470 | 395..582 | 280 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha16-5-RA | 725 | CG6737-RA | 87..668 | 17..598 | 2910 | 100 | Plus |
| Vha16-3-RB | 633 | CG32090-RB | 351..538 | 395..582 | 280 | 76.6 | Plus |
| Vha16-3-RA | 587 | CG32090-RA | 305..492 | 395..582 | 280 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10736376..10736957 | 598..17 | 2910 | 100 | Minus |
| 3L | 28110227 | 3L | 11473690..11473877 | 395..582 | 280 | 76.6 | Plus |
| 2R | 25286936 | 2R | 6627786..6627865 | 330..251 | 265 | 88.8 | Minus |
| 3L | 28110227 | 3L | 11475088..11475224 | 200..336 | 220 | 77.4 | Plus |
| 3L | 28110227 | 3L | 11475373..11475464 | 491..582 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:48:00 has no hits.
BS20176.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:44 Download gff for
BS20176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-5-RA | 427..1008 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:46 Download gff for
BS20176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-5-RA | 87..668 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:24 Download gff for
BS20176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-5-RA | 87..668 | 17..598 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:24 Download gff for
BS20176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10736376..10736957 | 17..598 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:46 Download gff for
BS20176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10736376..10736957 | 17..598 | 100 | | Minus |
BS20176.pep Sequence
Translation from 16 to 597
> BS20176.pep
MEMDYYLPVYNGSNSVDVPGLIESLKLKETSISPIVLDRYPPYSPFYGVM
GVVFSSVLTSAGAAYGTAVSGTGIAATAVMRPELVMKSIIPVVMAGIIAI
YGLVVSVLLSGELAPAPKYSLPTGYVHLAAGLSVGFAGLAAGYAVGEVGE
VGVRHIALQPRLFIGMILILIFAEVLGLYGLIIGIYLYTVNIK*
BS20176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha16-5-PA | 193 | CG6737-PA | 1..193 | 1..193 | 958 | 100 | Plus |
| Vha16-1-PB | 159 | CG3161-PB | 10..158 | 41..189 | 539 | 71.1 | Plus |
| Vha16-1-PA | 159 | CG3161-PA | 10..158 | 41..189 | 539 | 71.1 | Plus |
| Vha16-1-PD | 159 | CG3161-PD | 10..158 | 41..189 | 539 | 71.1 | Plus |
| Vha16-1-PC | 159 | CG3161-PC | 10..158 | 41..189 | 539 | 71.1 | Plus |
