Clone BS20178 Report

Search the DGRC for BS20178

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG31806-RA
Protein status:BS20178.pep: full length peptide match
Sequenced Size:488

Clone Sequence Records

BS20178.complete Sequence

488 bp assembled on 2011-01-07

GenBank Submission: KX800762

> BS20178.complete
GAAGTTATCAGTCGACATGAGCAACAAGAAATCAAAGTTGGTGCAATCGC
TGGAGGAGTCGACGCCGCCCATCGATGAAGAGGACGTCATCCGCTTGATT
GCTGACCAAATTCGCCAGCCTACGAGCGATCCAGTTGATATTAATTTAAG
CAACAAGGAGAATCTAAGCATTCTGCATCTCGAGGATGCCTTTAAATTCA
AAAATTCGATGCAAAGCTTTCACGTGTCGCCCACTGCTGAATCCTTAAAC
GAAGTCATGCCAGTGAAGGACGAGGATCTGGGCGAGATGCTGGATGCCCT
GACCGACGTGATCCTGGTTGAGGAAGACGATGAGGACGATGGCGATGATG
ATGATTATGAAGAAGAAGAGGAAGATGGTGACGACGAAGAGAATGAATTC
GATGAAGAGGACGCGGATGATGTCGACGAAAATGCTCCAAAAGCGAACTT
AAATTCAGGCTGGATATTTTAAAAGCTTTCTAGACCAT

BS20178.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31806-RB 456 CG31806-PB 1..456 17..472 2280 100 Plus
CG31806-RA 456 CG31806-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31806-RB 657 CG31806-RB 101..558 17..474 2290 100 Plus
CG31806-RA 606 CG31806-RA 101..558 17..474 2290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16985078..16985535 17..474 2290 100 Plus
Blast to na_te.dros performed 2014-11-26 15:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 1596..1694 275..370 126 64 Plus

BS20178.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:45 Download gff for BS20178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31806-RA 25..478 17..470 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:48 Download gff for BS20178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31806-RA 101..554 17..470 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:26 Download gff for BS20178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31806-RA 101..554 17..470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:26 Download gff for BS20178.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16985078..16985531 17..470 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:48 Download gff for BS20178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16985078..16985531 17..470 100   Plus

BS20178.pep Sequence

Translation from 16 to 471

> BS20178.pep
MSNKKSKLVQSLEESTPPIDEEDVIRLIADQIRQPTSDPVDINLSNKENL
SILHLEDAFKFKNSMQSFHVSPTAESLNEVMPVKDEDLGEMLDALTDVIL
VEEDDEDDGDDDDYEEEEEDGDDEENEFDEEDADDVDENAPKANLNSGWI
F*

BS20178.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31806-PB 151 CG31806-PB 1..151 1..151 779 100 Plus
CG31806-PA 151 CG31806-PA 1..151 1..151 779 100 Plus