Clone BS20179 Report

Search the DGRC for BS20179

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG6893-RB
Protein status:BS20179.pep: gold
Sequenced Size:785

Clone Sequence Records

BS20179.complete Sequence

785 bp assembled on 2011-01-07

GenBank Submission: KX802675

> BS20179.complete
GAAGTTATCAGTCGACATGGTGGTTATCAAGAAGGACAGAGGAATGGCTT
CAAATCTCCAACAGGCAATTCGAACGCATGGTTTTATTTCACTATACGAT
GGATTAAGTGCCCAGTTATTGAGACAGCTGACATACACCTCGATGCGGTT
TCACCTGTACGAAATGGGAAAGGAGCACCTGGATGATCCTGCTGGTTTGT
TGGACAAAGTGCTGGTGGCTGCATTGGCTGGTTGTGTGGCTGGTGTGGTG
GGTACACCCATGGAGTTGATCAACACCCGGATGCAGGTCAATCGCGCGCT
GCCCAAGGAAACGCGGTGGAACTATCGAAACGTCTTCGATGGACTGTACC
GTGTGACCAGGGAAGAGGGCTTTACGAAGCTGTACAGCGGATGTTTCCTC
TCCTTTATGCGGTCCAGCCTCATCACCATCAGCCAAAATGCTGCTTACGA
TCAGGCCAAGCAGATCTACGCAGAATTTTTTCACATGAAGCACGACAACA
CATTGCTGCACCTGATAAGTTCCGTGACGGCTGCTTTCGTCTGCGGTCCA
ATCATCAAGCCCATTGAGAACTTGAGATACCTCAGAATGGTGGATTCAAG
AAGATTGATAAATTCCATTTCCTATATGATGCGCTTCGGAAGTCGCGGAC
CTTTTCGCGGTATGGTGCCCTATGTTTTGCGCATGGTACCCAATACGGTC
ATTACTTTTTTAAGTTTCGAGCAGCTTCGTGTTAATTTTGGGTACATTGA
AATTGAAGATGATGAATGAAAGCTTTCTAGACCAT

BS20179.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6893-RB 753 CG6893-PB 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6893-RB 1164 CG6893-RB 284..1036 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18694767..18695142 80..455 1880 100 Plus
3L 28110227 3L 18695203..18695520 452..769 1590 100 Plus
3L 28110227 3L 18694524..18694589 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:48:21 has no hits.

BS20179.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:46 Download gff for BS20179.complete
Subject Subject Range Query Range Percent Splice Strand
CG6893-RB 284..1035 17..768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:51 Download gff for BS20179.complete
Subject Subject Range Query Range Percent Splice Strand
CG6893-RB 284..1035 17..768 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:30 Download gff for BS20179.complete
Subject Subject Range Query Range Percent Splice Strand
CG6893-RB 284..1035 17..768 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:30 Download gff for BS20179.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18694524..18694587 17..80 100 -> Plus
3L 18694768..18695141 81..454 100 -> Plus
3L 18695206..18695519 455..768 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:51 Download gff for BS20179.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18687624..18687687 17..80 100 -> Plus
arm_3L 18687868..18688241 81..454 100 -> Plus
arm_3L 18688306..18688619 455..768 100   Plus

BS20179.pep Sequence

Translation from 16 to 768

> BS20179.pep
MVVIKKDRGMASNLQQAIRTHGFISLYDGLSAQLLRQLTYTSMRFHLYEM
GKEHLDDPAGLLDKVLVAALAGCVAGVVGTPMELINTRMQVNRALPKETR
WNYRNVFDGLYRVTREEGFTKLYSGCFLSFMRSSLITISQNAAYDQAKQI
YAEFFHMKHDNTLLHLISSVTAAFVCGPIIKPIENLRYLRMVDSRRLINS
ISYMMRFGSRGPFRGMVPYVLRMVPNTVITFLSFEQLRVNFGYIEIEDDE
*

BS20179.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6893-PB 250 CG6893-PB 1..250 1..250 1286 100 Plus
Dic1-PC 280 CG8790-PC 43..277 10..242 409 39.5 Plus
Dic1-PA 280 CG8790-PA 43..277 10..242 409 39.5 Plus
Dic1-PB 280 CG8790-PB 43..277 10..242 409 39.5 Plus
Dic4-PC 302 CG18363-PC 47..292 1..242 391 34.8 Plus