BS20179.complete Sequence
785 bp assembled on 2011-01-07
GenBank Submission: KX802675
> BS20179.complete
GAAGTTATCAGTCGACATGGTGGTTATCAAGAAGGACAGAGGAATGGCTT
CAAATCTCCAACAGGCAATTCGAACGCATGGTTTTATTTCACTATACGAT
GGATTAAGTGCCCAGTTATTGAGACAGCTGACATACACCTCGATGCGGTT
TCACCTGTACGAAATGGGAAAGGAGCACCTGGATGATCCTGCTGGTTTGT
TGGACAAAGTGCTGGTGGCTGCATTGGCTGGTTGTGTGGCTGGTGTGGTG
GGTACACCCATGGAGTTGATCAACACCCGGATGCAGGTCAATCGCGCGCT
GCCCAAGGAAACGCGGTGGAACTATCGAAACGTCTTCGATGGACTGTACC
GTGTGACCAGGGAAGAGGGCTTTACGAAGCTGTACAGCGGATGTTTCCTC
TCCTTTATGCGGTCCAGCCTCATCACCATCAGCCAAAATGCTGCTTACGA
TCAGGCCAAGCAGATCTACGCAGAATTTTTTCACATGAAGCACGACAACA
CATTGCTGCACCTGATAAGTTCCGTGACGGCTGCTTTCGTCTGCGGTCCA
ATCATCAAGCCCATTGAGAACTTGAGATACCTCAGAATGGTGGATTCAAG
AAGATTGATAAATTCCATTTCCTATATGATGCGCTTCGGAAGTCGCGGAC
CTTTTCGCGGTATGGTGCCCTATGTTTTGCGCATGGTACCCAATACGGTC
ATTACTTTTTTAAGTTTCGAGCAGCTTCGTGTTAATTTTGGGTACATTGA
AATTGAAGATGATGAATGAAAGCTTTCTAGACCAT
BS20179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6893-RB | 753 | CG6893-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6893-RB | 1164 | CG6893-RB | 284..1036 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18694767..18695142 | 80..455 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 18695203..18695520 | 452..769 | 1590 | 100 | Plus |
3L | 28110227 | 3L | 18694524..18694589 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:48:21 has no hits.
BS20179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:46 Download gff for
BS20179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6893-RB | 284..1035 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:51 Download gff for
BS20179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6893-RB | 284..1035 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:30 Download gff for
BS20179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6893-RB | 284..1035 | 17..768 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:30 Download gff for
BS20179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18694524..18694587 | 17..80 | 100 | -> | Plus |
3L | 18694768..18695141 | 81..454 | 100 | -> | Plus |
3L | 18695206..18695519 | 455..768 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:51 Download gff for
BS20179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18687624..18687687 | 17..80 | 100 | -> | Plus |
arm_3L | 18687868..18688241 | 81..454 | 100 | -> | Plus |
arm_3L | 18688306..18688619 | 455..768 | 100 | | Plus |
BS20179.pep Sequence
Translation from 16 to 768
> BS20179.pep
MVVIKKDRGMASNLQQAIRTHGFISLYDGLSAQLLRQLTYTSMRFHLYEM
GKEHLDDPAGLLDKVLVAALAGCVAGVVGTPMELINTRMQVNRALPKETR
WNYRNVFDGLYRVTREEGFTKLYSGCFLSFMRSSLITISQNAAYDQAKQI
YAEFFHMKHDNTLLHLISSVTAAFVCGPIIKPIENLRYLRMVDSRRLINS
ISYMMRFGSRGPFRGMVPYVLRMVPNTVITFLSFEQLRVNFGYIEIEDDE
*
BS20179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6893-PB | 250 | CG6893-PB | 1..250 | 1..250 | 1286 | 100 | Plus |
Dic1-PC | 280 | CG8790-PC | 43..277 | 10..242 | 409 | 39.5 | Plus |
Dic1-PA | 280 | CG8790-PA | 43..277 | 10..242 | 409 | 39.5 | Plus |
Dic1-PB | 280 | CG8790-PB | 43..277 | 10..242 | 409 | 39.5 | Plus |
Dic4-PC | 302 | CG18363-PC | 47..292 | 1..242 | 391 | 34.8 | Plus |