BS20180.complete Sequence
755 bp assembled on 2011-01-07
GenBank Submission: KX804451
> BS20180.complete
GAAGTTATCAGTCGACATGGCACAACCAGGCGGAGATCACATGATCATCG
CTATCACCACACTGTTGGTTTTGATCTGTTCCCTACATCTCGCCAATGCA
GCCAGCTATCAGCTACAATCTTACGATCTTGATACGGATAATAGGGCTGC
ATCGAACTCCAGCGAGGAGGTGTTCAATGGCGGAGTCACGTCCCTGGAAA
GACCTCTTTCTTGGCTGCGGAATGCCAACAGCGTGTTCGGCAGTCCCGCT
GGTCATGTGGTCATCCAGGTGGCCAAGGAGCTGTTACATCGATCAGCCGG
AAACAGTCAAGTTCTAAGTCTGAATCTGACCAACCTGCTTATCATCATAC
TCCTGAAAATACTTATCTTCTCAGCCGGAATGCTGGGCGCTGGGCACTGG
AGTGGCTATGGTTATGGACATGGTCGCTCAGCCGGTCGTAGTGATAACTT
CGGTTTGGGCATAGCTTCTGGCGATGACTATCTTATAACCGGATTTCTCG
CCGCCCAAGGAGCCGGCAGAGATGAGTGCCTCTATGCAGCATCCTGTGCC
TGCCCCACATCGGCCTATGAGTACGCGAAAGCAGGACGTGCTCTTATGGG
CGCCATTGAAGTTTTCCAAGGAGTGCCGCTGGAGAAGCCGCGCTACAACG
ACCTCATCGTCCTGATGGAGCGAGCCGCCTACGATGGCTTCCGAGGAGTG
GCCTGCAACACGACCCAGACCTGTGACGGATTGCTTTAAAAGCTTTCTAG
ACCAT
BS20180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12420-RA | 723 | CG12420-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12420-RA | 855 | CG12420-RA | 61..784 | 17..740 | 3620 | 100 | Plus |
| CG12817-RB | 1060 | CG12817-RB | 826..945 | 740..621 | 600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10223116..10223426 | 311..621 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 10222758..10223053 | 17..312 | 1480 | 100 | Plus |
| 3R | 32079331 | 3R | 10223555..10223674 | 621..740 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:48:32 has no hits.
BS20180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:47 Download gff for
BS20180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12420-RA | 46..766 | 17..737 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:53 Download gff for
BS20180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12420-RA | 61..781 | 17..737 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:33 Download gff for
BS20180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12420-RA | 61..781 | 17..737 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:33 Download gff for
BS20180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10223556..10223671 | 622..737 | 100 | | Plus |
| 3R | 10222758..10223051 | 17..310 | 100 | -> | Plus |
| 3R | 10223116..10223426 | 311..621 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:53 Download gff for
BS20180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6048838..6049148 | 311..621 | 100 | -> | Plus |
| arm_3R | 6049278..6049393 | 622..737 | 100 | | Plus |
| arm_3R | 6048480..6048773 | 17..310 | 100 | -> | Plus |
BS20180.pep Sequence
Translation from 16 to 738
> BS20180.pep
MAQPGGDHMIIAITTLLVLICSLHLANAASYQLQSYDLDTDNRAASNSSE
EVFNGGVTSLERPLSWLRNANSVFGSPAGHVVIQVAKELLHRSAGNSQVL
SLNLTNLLIIILLKILIFSAGMLGAGHWSGYGYGHGRSAGRSDNFGLGIA
SGDDYLITGFLAAQGAGRDECLYAASCACPTSAYEYAKAGRALMGAIEVF
QGVPLEKPRYNDLIVLMERAAYDGFRGVACNTTQTCDGLL*
BS20180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12420-PA | 240 | CG12420-PA | 1..240 | 1..240 | 1237 | 100 | Plus |
