Clone BS20184 Report

Search the DGRC for BS20184

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG13829-RA
Protein status:BS20184.pep: gold
Sequenced Size:668

Clone Sequence Records

BS20184.complete Sequence

668 bp assembled on 2011-01-07

GenBank Submission: KX803208

> BS20184.complete
GAAGTTATCAGTCGACATGATTGCCAAGCTGCGCAAGATTTATCCCAGTG
GAAAGGTGGTTAGCCATTCCCTCGCTCCCTGCTCCACAGCGGATCTGAAC
AATGCTGAACTTGTTTCCAATGTCAAGAAAAGGCGAGCCGAATATCTCGT
CGAACGAATGCAGCGACTGCTGCTCTTTCTGACCGTCTTCCTTCTGTTTC
CCGTGGTGATCTTCGTCATCTTCAAGTTCTTGATTATGGAGCCGCTCTAC
GGAAACAGCGATGACAATGTGGGCATTGGATCCGGCGTAGCCACGGTAAT
TGTGATGCATGTCCTGGTCACGGGCTATATCCTGCGCCTGATCTTCCTTC
AAGAGATTTCGAGCATGGAGAAGCTGGAGTGGGAAGTTCTGATGCCACCA
AACACCCAAATTCATGGATCCGTGTTCATTGTCCTGCTGCTGATGTCCTA
CTGTTCCCTAATAATTGGCTTTCCCATAGCCACCTTTTTTGCCCTGAAAT
TTGTGGTGCTCAAGAGCTATGCCCATATCAATGCCGATATTATTTCGACC
ATTTGCACCGTAGTTGCAGTTCATGCAGCAGTTGGCTTTTACATCTACCG
AGCCATCTATGCAAAGAGTGTGACGGCCAAAAGCGCCAAAATATCTCTGT
AAAAGCTTTCTAGACCAT

BS20184.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13829-RA 636 CG13829-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13829-RA 810 CG13829-RA 21..658 17..654 3190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23160629..23161157 654..126 2645 100 Minus
3R 32079331 3R 23161208..23161318 127..17 555 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:47:37 has no hits.

BS20184.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:41 Download gff for BS20184.complete
Subject Subject Range Query Range Percent Splice Strand
CG13829-RA 21..654 17..650 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:39 Download gff for BS20184.complete
Subject Subject Range Query Range Percent Splice Strand
CG13829-RA 21..654 17..650 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:13 Download gff for BS20184.complete
Subject Subject Range Query Range Percent Splice Strand
CG13829-RA 21..654 17..650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:13 Download gff for BS20184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23160633..23161155 128..650 100 <- Minus
3R 23161208..23161318 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:39 Download gff for BS20184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18986355..18986877 128..650 100 <- Minus
arm_3R 18986930..18987040 17..127 100   Minus

BS20184.pep Sequence

Translation from 16 to 651

> BS20184.pep
MIAKLRKIYPSGKVVSHSLAPCSTADLNNAELVSNVKKRRAEYLVERMQR
LLLFLTVFLLFPVVIFVIFKFLIMEPLYGNSDDNVGIGSGVATVIVMHVL
VTGYILRLIFLQEISSMEKLEWEVLMPPNTQIHGSVFIVLLLMSYCSLII
GFPIATFFALKFVVLKSYAHINADIISTICTVVAVHAAVGFYIYRAIYAK
SVTAKSAKISL*

BS20184.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13829-PA 211 CG13829-PA 1..211 1..211 1046 100 Plus