BS20190.complete Sequence
794 bp assembled on 2011-01-07
GenBank Submission: KX800893
> BS20190.complete
GAAGTTATCAGTCGACATGCAGCTTAAAAGTGAGTTCCTTATAATTTACG
TTTTTGGATTGGCCACAATGGGTCTGATGATGGGCATCGCCTGTGTGGTG
ATTCCCCGATTGTGGTTCTTTCTGGAGAAGGTTTATAGGGTTTTCGTGGA
GTACACTCCCATCATTTACTTAAGTGAGGATCGCCTGTCGCCCGTTTCCA
AAAGCCGACTGAGTCTCGTGGCCAGGAAGACACTTGTCCTGGACATGGAT
AACACCATGATCACGTCGTGGTTTATAAAGAGGGGAAAAAAACCGAAGAA
TATACCACGAATTGCGCATGACTTTAAGTTCTACTTGCCGGCCTATGGAG
CCACCATCTATGTCTACAAGCGCCCCTATTTGGATCACTTCCTCGATCGC
GTATCCAAGTGGTACGACCTGACTGTCTTCACATCCGGAGCCGAGATATA
TGCCTCTCCGATTCTCGACTTTCTGGACAGGGGACGTGGCATCCTAAACA
GTCGCCTCTACCGGCAGCATTGCATAGAACAGTTTGGAAAGTGGTCCAAG
TCCGTACTGCTGGCCTGCCCGGATTTGTCCAATGTTGTGCTGCTGGACAA
CTCCAGCACGGAGTGCAGTTTCAATGCGGAAAACGCCATTCTCATCAAGT
CCTATGAAATCGGCTGTCGCGACGAGGCCCTCATCAATTTGTTACCTTTT
CTGGACGCCCTGCGATTCATGAAGGATGTGCGATCGATGCTCAAACGTTG
CACTCGCTTCGAAAGTTTTGCTCAGTGAAAGCTTTCTAGACCAT
BS20190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12078-RA | 762 | CG12078-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
| CG12078-RB | 711 | CG12078-PB | 1..711 | 68..778 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12078-RA | 954 | CG12078-RA | 117..878 | 17..778 | 3810 | 100 | Plus |
| CG12078-RB | 935 | CG12078-RB | 129..859 | 48..778 | 3655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3243350..3244079 | 778..49 | 3650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:49:37 has no hits.
BS20190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:54 Download gff for
BS20190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12078-RA | 86..846 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:10 Download gff for
BS20190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12078-RA | 117..877 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:58 Download gff for
BS20190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12078-RA | 117..877 | 17..777 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:58 Download gff for
BS20190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3243351..3244079 | 49..777 | 100 | <- | Minus |
| 3L | 3244147..3244178 | 17..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:10 Download gff for
BS20190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3243351..3244079 | 49..777 | 100 | <- | Minus |
| arm_3L | 3244147..3244178 | 17..48 | 100 | | Minus |
BS20190.pep Sequence
Translation from 16 to 777
> BS20190.pep
MQLKSEFLIIYVFGLATMGLMMGIACVVIPRLWFFLEKVYRVFVEYTPII
YLSEDRLSPVSKSRLSLVARKTLVLDMDNTMITSWFIKRGKKPKNIPRIA
HDFKFYLPAYGATIYVYKRPYLDHFLDRVSKWYDLTVFTSGAEIYASPIL
DFLDRGRGILNSRLYRQHCIEQFGKWSKSVLLACPDLSNVVLLDNSSTEC
SFNAENAILIKSYEIGCRDEALINLLPFLDALRFMKDVRSMLKRCTRFES
FAQ*
BS20190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12078-PA | 253 | CG12078-PA | 1..253 | 1..253 | 1316 | 100 | Plus |
| CG12078-PB | 236 | CG12078-PB | 1..236 | 18..253 | 1234 | 100 | Plus |
| Dd-PA | 243 | CG1696-PA | 14..235 | 27..244 | 445 | 44.2 | Plus |
| Dd-PB | 240 | CG1696-PB | 44..232 | 57..244 | 422 | 48.4 | Plus |
| CG8584-PA | 293 | CG8584-PA | 63..277 | 37..244 | 370 | 40.3 | Plus |
