Clone BS20193 Report

Search the DGRC for BS20193

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptSgf11-RB
Protein status:BS20193.pep: full length peptide match
Sequenced Size:623

Clone Sequence Records

BS20193.complete Sequence

623 bp assembled on 2011-01-07

GenBank Submission: KX805758

> BS20193.complete
GAAGTTATCAGTCGACATGTCTGCAGCCAACATGCCGACGACAACAGGAG
CTCAGGGATCGGGAAACCAAGTTCCCACAACTAGCACTACGATTGTAAAC
CACTTCCGGGAGTTGATCAAGGAACCGAAGAACCTCGACGAGGCGGCCAA
CTATCTGTACCAGTCGCTGCTCGACGACGCCGTAGTCGGAATCTTTAACG
AGACACATCATCTGCGAAAGTCAGGGAATCTGGCCGCCCTGGACGGAGTG
CCGGAGGACTCAACCTATCGAATGTGCGAGATGCCCAACCTGGACATATT
CGGCATCTCAACGGCCAAAAAGCCAATGGACTGCACCTGCCCCAACTGTG
ATCGCCTGGTGGCCGCCGCCCGCTTCGCCCCGCACCTGGAAAAGTGCATG
GGCATGGGTCGTATCTCGTCGCGAATTGCCTCTCGTCGCTTGGCCACCAA
AGAGGGCGCCACATCCGCCCACCTGCACTCTTCGGGAAATACCGGAGGCA
CTGATGATGAGGATGACGTGGACTGGTCGTCCGACAAGCGTCGAAAGAAA
TCAAACCAGAACTCAAGGAACAACGGCTCCAAGAAGAACAATGGCAAAAC
CTTTTAGAAGCTTTCTAGACCAT

BS20193.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf11-RB 591 CG13379-PB 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf11-RB 800 CG13379-RB 149..739 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18681098..18681688 607..17 2955 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:50:04 has no hits.

BS20193.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:58 Download gff for BS20193.complete
Subject Subject Range Query Range Percent Splice Strand
Sgf11-RB 103..693 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:16 Download gff for BS20193.complete
Subject Subject Range Query Range Percent Splice Strand
Sgf11-RB 149..739 17..607 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:07 Download gff for BS20193.complete
Subject Subject Range Query Range Percent Splice Strand
Sgf11-RB 149..739 17..607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:07 Download gff for BS20193.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18681098..18681688 17..607 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:16 Download gff for BS20193.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18674198..18674788 17..607 100   Minus

BS20193.pep Sequence

Translation from 16 to 606

> BS20193.pep
MSAANMPTTTGAQGSGNQVPTTSTTIVNHFRELIKEPKNLDEAANYLYQS
LLDDAVVGIFNETHHLRKSGNLAALDGVPEDSTYRMCEMPNLDIFGISTA
KKPMDCTCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLATKEGATS
AHLHSSGNTGGTDDEDDVDWSSDKRRKKSNQNSRNNGSKKNNGKTF*

BS20193.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf11-PB 196 CG13379-PB 1..196 1..196 1034 100 Plus