Clone BS20196 Report

Search the DGRC for BS20196

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:201
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG14315-RA
Protein status:BS20196.pep: full length peptide match
Sequenced Size:685

Clone Sequence Records

BS20196.complete Sequence

685 bp assembled on 2011-01-07

GenBank Submission: KX800472

> BS20196.complete
GAAGTTATCAGTCGACATGAGGGTCTACTTGTATCAAATGCGCCCGGTGC
TCTTTCTCTTCTACATGGTGGAGACGACGGCCAACTTATTCGTTTTGTAC
TACCAACTGAAAGCATTTGTTTTCGTCAATCTGACAACGATGAAATGGGA
AGATGTTCTAATCCAAAGCTTTTATATGTCCTTCTTTTACATATTCACAG
TGGTAACGCTCTTTGCCAGCATAAATCTCTGCACCGGTCATCGCACATCG
ATCGTTGAGGAAGTTGTGCGTCCTCTGATCGGATTTGTTCTATATACGGT
AATATCGTTGATGGCACTGGGCGATGCCGAGACGGATTTCTATATATGGT
ATGATGGAAGGAACCCGGATGATTTACTATATCCGGAGAAGCCGCTCCAT
CCGTTCTTCGGTAGCCTGCGGGACCAGGCGACAGCCTCATTGGTGTCCAG
TGTTATCTATCTGCTGCACTGCCTCATTGCGTTGGATGTCCTTCTGTCGA
ATGACGATTCGGATAACGAACGCGAGTCATCCAATTCCTCCGACGATGTG
AACGAAGAGGTCGACTACGTTCCAGTGCGTCTGTACGTCTTTGGCGGCGT
GATGCAACGCTGGCTGGAGCAGTTCGACTGGTTTCAGGACTTTACCCACA
GTGGAGTCACAGATATCTGAAGCTTTCTAGACCAT

BS20196.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14315-RA 654 CG14315-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14315-RA 771 CG14315-RA 70..723 17..670 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18158770..18159423 17..670 3270 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:49:08 has no hits.

BS20196.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:31:51 Download gff for BS20196.complete
Subject Subject Range Query Range Percent Splice Strand
CG14315-RA 70..722 17..669 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:02 Download gff for BS20196.complete
Subject Subject Range Query Range Percent Splice Strand
CG14315-RA 70..722 17..669 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:48 Download gff for BS20196.complete
Subject Subject Range Query Range Percent Splice Strand
CG14315-RA 70..722 17..669 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:48 Download gff for BS20196.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18158770..18159422 17..669 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:02 Download gff for BS20196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13984492..13985144 17..669 100   Plus

BS20196.pep Sequence

Translation from 16 to 669

> BS20196.pep
MRVYLYQMRPVLFLFYMVETTANLFVLYYQLKAFVFVNLTTMKWEDVLIQ
SFYMSFFYIFTVVTLFASINLCTGHRTSIVEEVVRPLIGFVLYTVISLMA
LGDAETDFYIWYDGRNPDDLLYPEKPLHPFFGSLRDQATASLVSSVIYLL
HCLIALDVLLSNDDSDNERESSNSSDDVNEEVDYVPVRLYVFGGVMQRWL
EQFDWFQDFTHSGVTDI*

BS20196.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14315-PA 217 CG14315-PA 1..217 1..217 1137 100 Plus
CG34433-PA 233 CG34433-PA 31..230 8..214 377 34.6 Plus
CG34433-PB 212 CG34433-PB 31..209 8..214 295 29.4 Plus
CG34432-PA 213 CG34432-PA 20..213 8..217 220 24.9 Plus