Clone BS20227 Report

Search the DGRC for BS20227

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:202
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG12848-RA
Protein status:BS20227.pep: full length peptide match
Sequenced Size:395

Clone Sequence Records

BS20227.complete Sequence

395 bp assembled on 2011-01-07

GenBank Submission: KX801326

> BS20227.complete
GAAGTTATCAGTCGACATGCGCGTACCCGGAGCCCTGTTTGCCGCGCGCG
GCCGAGCGCCTCAAAGCGAGAAGGACGTGCCCTTCCAGGAGATTCTGCCT
CTGCGGCTGAAGAACACCGTGAGCGGGAAGGCGGACTCCGGATCCGATGT
GGCCTGTCTCCAGGAGATGGGCGTGCTGTTCGCCTGCTTGAAAGACAACG
AATTCGTGGAGAAGTACTGCCACAAGGAGATCAGCCAGTTCCAGAACTGC
TACAAGTGCTACATGGACCGTAAGTTTGAGGCGAAGAAGACCGTGAACCA
GGGAATCGTCCAACCGGGCAGCAACCTGAACTACAAGCAACTTAACAAGT
ACATGCGCCGCTACCCCAATCCCGTATAGAAGCTTTCTAGACCAT

BS20227.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12848-RB 363 CG12848-PB 1..363 17..379 1815 100 Plus
CG12848-RA 363 CG12848-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12848-RA 469 CG12848-RA 59..425 13..379 1820 99.7 Plus
CG12848-RB 478 CG12848-RB 72..434 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24762610..24762972 379..17 1815 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:50:24 has no hits.

BS20227.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:01 Download gff for BS20227.complete
Subject Subject Range Query Range Percent Splice Strand
CG12848-RA 51..413 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:23 Download gff for BS20227.complete
Subject Subject Range Query Range Percent Splice Strand
CG12848-RA 63..425 17..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:13 Download gff for BS20227.complete
Subject Subject Range Query Range Percent Splice Strand
CG12848-RA 63..425 17..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:13 Download gff for BS20227.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24762610..24762972 17..379 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:23 Download gff for BS20227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20650133..20650495 17..379 100   Minus

BS20227.pep Sequence

Translation from 16 to 378

> BS20227.pep
MRVPGALFAARGRAPQSEKDVPFQEILPLRLKNTVSGKADSGSDVACLQE
MGVLFACLKDNEFVEKYCHKEISQFQNCYKCYMDRKFEAKKTVNQGIVQP
GSNLNYKQLNKYMRRYPNPV*

BS20227.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12848-PB 120 CG12848-PB 1..120 1..120 640 100 Plus
CG12848-PA 120 CG12848-PA 1..120 1..120 640 100 Plus