BS20243.complete Sequence
1709 bp assembled on 2011-01-28
GenBank Submission: KX801264
> BS20243.complete
GAAGTTATCAGTCGACATGGCAACCGCTTGCAATCGACTGACATGGTCGC
TGGTAGTGGTGGTGGCGGTGATGGCGGTCATGTGCTCATCCGCGGAGGCT
GCCGACAAGGAGGGCTTTCCCGTGGCCATAATCCACATAAATGATTTGCA
CGCCAGGTTCGAGGCCACGGACACCTCCGGTGGCACCTGCGACGAGGGCG
AGGAGTGCATCGGTGGCTATCCGCGCACCGTTTACACCGTGAAGCGTCTG
CTTCAGGAGCAAGCGGAGCTCAATCCCATCTACATCAATGCCGGCGACAG
TTTTCAGGGCACGTTGTGGTACAACATCGGTCGATGGAACGTTACGCAGC
AGCTGCTGAACCTTCTGCCCGCCGATGTGATGACCCTCGGCAATCACGAG
TTCGATCACGGTGTGGAGGGCGTGGTGCCATTCCTAGAGACGGTGGACAC
CAATATGCTGGTGGCCAACATGGACTGCGCCCACGAGCCCACCATGGAGG
GCAAGTACAACAAGTCGATGATAATCGAGCGATCGGGCCGCAAGATTGGT
GTGATTGGTGTTATCCTGGAGACAACCTACGATCTGGCCAATACCGGTAA
GGTGATCTTTCGCAACGAGAGCGACACCATTCGCGAGGAGGCGCAGCTGC
TGAAGGCCCAGGGTGCCAACATCATCATTGTCGTCTCCCACTGCGGCTAC
GATGTGGATCAGCAGATCGCTGCGAATGCCGGCGATTGGATCGACGTCAT
CGTTGGCTCCCATTCGCACACCTTCCTCTACACGGGTGATCCGCCTGGGC
CACACACGCCATCCGGTGATTATCCCACCGAGGTTATCCACAGCTCTGGC
CACCGCGTGCTCATTGTCCAGGCATCGGCCTATGCCCGCTACGTGGGCAA
CCTGATCGTCTATTTCGATGACAACGGCGATGTGCTGGACTACGAGGGTG
ATCCGCTCTACATGGACCAATCCGTGCCAGAAGATGATATCGTTCTACAA
GCCATGGTGCCTTGGCAACTCGAGATGAAACCCATTGCCGAGCGGACAGT
GGGCCAGAGTCGCGTGAATCTCCAGCAGAGTCAGTGCAGCAGTGGGGAAT
GCAATCTGGGTAACTTCTTCACCGATGCTATGCTTCATGCGTTTGTCAAG
GATGCTTCATCGTCGTCTGAAGAGAGTTGGAGTAACGTGACCATTGCCTT
GACATCAACGGGAACTTTTCGAGTGCCTATTCCAGCTGGCAACATCACCT
ACAAGCAATTGTTTGCCATGTGCCCATGGCAGAATAGACTGGTGACCCTC
AGTCTGCGTGGTAAGCACATTGTGGAGCTGCTGGAGCATGTGGTGGCGCC
CATGAATGCCAGTTCGGCCACGCCGCGTTCCTCCCGATTCCTCCAGGTTT
CCGGTCTCCGTATCCGTTACGATTTGAACGCCGATCAGCGAGTATTCAGT
GTGCGAGTAAGATGCTCCAAGTGCCTGGTGCCCAGGTATATTCCACTCGA
TTTGGAGCACAAGTACCGCGTGGTCGTCATGGAGTACCTGGCGAATGGGA
AGAACGGATTTAGCGTAATCAGCGAAAATGCAGAAGATCCAGAGTTTGGT
CCTTTCGACTTGGACGCCTTAATGGACTACATGAACTCCACCGGGCCAAT
TACGACTGCAATCGAGCAAAGGATTCAGTTTGTAACTACTTAGAAGCTTT
CTAGACCAT
BS20243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42249-RD | 1677 | CG42249-PD | 1..1677 | 17..1693 | 8385 | 100 | Plus |
| CG42249-RC | 1677 | CG42249-PC | 1..1677 | 17..1693 | 8385 | 100 | Plus |
| CG42249-RB | 1674 | CG42249-PB | 1..971 | 17..987 | 4855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42249-RD | 1827 | CG42249-RD | 81..1758 | 17..1694 | 8390 | 100 | Plus |
| CG42249-RC | 1818 | CG42249-RC | 72..1749 | 17..1694 | 8390 | 100 | Plus |
| CG42249-RB | 1820 | CG42249-RB | 72..1042 | 17..987 | 4855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11104375..11104777 | 581..983 | 2015 | 100 | Plus |
| X | 23542271 | X | 11107569..11107922 | 1242..1595 | 1770 | 100 | Plus |
| X | 23542271 | X | 11103826..11104054 | 154..382 | 1145 | 100 | Plus |
| X | 23542271 | X | 11104112..11104311 | 382..581 | 1000 | 100 | Plus |
| X | 23542271 | X | 11107188..11107348 | 981..1141 | 805 | 100 | Plus |
| X | 23542271 | X | 11103476..11103617 | 17..158 | 710 | 100 | Plus |
| X | 23542271 | X | 11107406..11107506 | 1141..1241 | 505 | 100 | Plus |
| X | 23542271 | X | 11107979..11108079 | 1594..1694 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:34:57 has no hits.
BS20243.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:03 Download gff for
BS20243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42249-RC | 72..1748 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:34 Download gff for
BS20243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42249-RC | 72..1748 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:30 Download gff for
BS20243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42249-RC | 72..1748 | 17..1693 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:30 Download gff for
BS20243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11107191..11107348 | 984..1141 | 100 | -> | Plus |
| X | 11107407..11107506 | 1142..1241 | 100 | -> | Plus |
| X | 11107569..11107920 | 1242..1593 | 100 | -> | Plus |
| X | 11107979..11108078 | 1594..1693 | 100 | | Plus |
| X | 11103476..11103615 | 17..156 | 100 | -> | Plus |
| X | 11103829..11104054 | 157..382 | 100 | -> | Plus |
| X | 11104113..11104310 | 383..580 | 100 | -> | Plus |
| X | 11104375..11104777 | 581..983 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:34 Download gff for
BS20243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11001224..11001381 | 984..1141 | 100 | -> | Plus |
| arm_X | 11001602..11001953 | 1242..1593 | 100 | -> | Plus |
| arm_X | 11002012..11002111 | 1594..1693 | 100 | | Plus |
| arm_X | 10997509..10997648 | 17..156 | 100 | -> | Plus |
| arm_X | 10997862..10998087 | 157..382 | 100 | -> | Plus |
| arm_X | 10998146..10998343 | 383..580 | 100 | -> | Plus |
| arm_X | 10998408..10998810 | 581..983 | 100 | -> | Plus |
| arm_X | 11001440..11001539 | 1142..1241 | 100 | -> | Plus |
BS20243.pep Sequence
Translation from 16 to 1692
> BS20243.pep
MATACNRLTWSLVVVVAVMAVMCSSAEAADKEGFPVAIIHINDLHARFEA
TDTSGGTCDEGEECIGGYPRTVYTVKRLLQEQAELNPIYINAGDSFQGTL
WYNIGRWNVTQQLLNLLPADVMTLGNHEFDHGVEGVVPFLETVDTNMLVA
NMDCAHEPTMEGKYNKSMIIERSGRKIGVIGVILETTYDLANTGKVIFRN
ESDTIREEAQLLKAQGANIIIVVSHCGYDVDQQIAANAGDWIDVIVGSHS
HTFLYTGDPPGPHTPSGDYPTEVIHSSGHRVLIVQASAYARYVGNLIVYF
DDNGDVLDYEGDPLYMDQSVPEDDIVLQAMVPWQLEMKPIAERTVGQSRV
NLQQSQCSSGECNLGNFFTDAMLHAFVKDASSSSEESWSNVTIALTSTGT
FRVPIPAGNITYKQLFAMCPWQNRLVTLSLRGKHIVELLEHVVAPMNASS
ATPRSSRFLQVSGLRIRYDLNADQRVFSVRVRCSKCLVPRYIPLDLEHKY
RVVVMEYLANGKNGFSVISENAEDPEFGPFDLDALMDYMNSTGPITTAIE
QRIQFVTT*
BS20243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42249-PD | 558 | CG42249-PD | 1..558 | 1..558 | 2922 | 100 | Plus |
| CG42249-PC | 558 | CG42249-PC | 1..558 | 1..558 | 2922 | 100 | Plus |
| CG42249-PB | 557 | CG42249-PB | 1..553 | 1..553 | 2139 | 74.6 | Plus |
| veil-PB | 599 | CG4827-PB | 39..568 | 38..553 | 837 | 36 | Plus |
| veil-PA | 599 | CG4827-PA | 39..568 | 38..553 | 837 | 36 | Plus |
