BS20253.complete Sequence
608 bp assembled on 2011-01-07
GenBank Submission: KX801596
> BS20253.complete
GAAGTTATCAGTCGACATGTTCTCAGCCAAGAGTTCTGCAATTGTGGCCG
TAGTCCTCGTCCAGATGGTGGCTCAAATCCACGGAGGAGTCTACAGCTAT
GAGGACAAGTGGGTGTACCTGGACAAGACCCTGGACCTTCCAGAGGAAGC
GATTCTCGGTGGCGTCGATCCCGATGGTTACTACACCTACGTGGGTCGTG
TCACATACAGCAGTAACATTCTGCCAGCCCGAGTGGTACCGGAGCTGGGA
AAGGCCACCTACAACACCGACACCTTGGGCAACCAAGCCACCACCTACGA
GGTTCTGGTGTCCAACGCCACTGTCGGCTACCATTGGATCCGTAGTTTCG
ATGGTTTCCGGGAAAAGAACGCCGTATCTGTGGGAACCAACGCCCTCAGC
GAGCGTGTCTTCATCTGTCGTGTCCGCTGTGATGAATCCATCTTTATCGG
CACTCTGTACCTTTCCAAGCGGATGTGCATCGTCAAGTACGACAACTTTC
CGCTCCGGCAGTTCGACAAGTACGAGATCCTTGTCCGCGAACGCCATGTA
GCTGCCGTCTCGCCATTTGTTGATGGTTATATCCACCATTAAAAGCTTTC
TAGACCAT
BS20253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16775-RB | 576 | CG16775-PB | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16775-RB | 698 | CG16775-RB | 4..585 | 16..597 | 2895 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17886061..17886642 | 597..16 | 2895 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:50:36 has no hits.
BS20253.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:03 Download gff for
BS20253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16775-RB | 10..578 | 22..590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:24 Download gff for
BS20253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16775-RB | 10..578 | 22..590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:16 Download gff for
BS20253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16775-RB | 10..578 | 22..590 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:16 Download gff for
BS20253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17886068..17886636 | 22..590 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:24 Download gff for
BS20253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17879168..17879736 | 22..590 | 100 | | Minus |
BS20253.pep Sequence
Translation from 16 to 591
> BS20253.pep
MFSAKSSAIVAVVLVQMVAQIHGGVYSYEDKWVYLDKTLDLPEEAILGGV
DPDGYYTYVGRVTYSSNILPARVVPELGKATYNTDTLGNQATTYEVLVSN
ATVGYHWIRSFDGFREKNAVSVGTNALSERVFICRVRCDESIFIGTLYLS
KRMCIVKYDNFPLRQFDKYEILVRERHVAAVSPFVDGYIHH*
BS20253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16775-PB | 191 | CG16775-PB | 1..191 | 1..191 | 998 | 100 | Plus |
| CG5506-PA | 180 | CG5506-PA | 4..172 | 9..175 | 400 | 48.5 | Plus |
| CG44250-PC | 297 | CG44250-PC | 7..157 | 23..177 | 188 | 31.6 | Plus |
| CG44251-PA | 478 | CG44251-PA | 4..147 | 31..178 | 186 | 34.7 | Plus |
| CG44250-PB | 286 | CG44250-PB | 2..146 | 29..177 | 173 | 30.9 | Plus |
