BS20266.complete Sequence
686 bp assembled on 2011-01-07
GenBank Submission: KX803678
> BS20266.complete
GAAGTTATCAGTCGACATGGAAAACCTAGACGCCACCATAGATAGCATGG
AGAACAGTCGGTTTGCAGCGCTCTACGGGAGTTTGATCAAGGAGTTAACC
CTAACTTCGGAGTTGTCCCAGACGGACATCACCTGTTTGCTCGTCGTTTA
TTACAAGTTCTCAAAGGCCAACGGACCGCAGTGCAAGCAGATGACCAAGA
AGCAGTTCTATCAGATCTTCTTGGTGCTCTTCAACGTGGCCAGTGTCCAG
GTGATCGAACGCACTCTGCTCGCGATCACAAAAGATACGAAATATGTCAG
TCCCAGGGCCTGGATCCACCTCTTCGATCTCTACACAACCAATGACATTC
AAGTGCGAATGCGATTTGCTTTCGAGGTCTATGATACCAAAGGCACTGGC
GTTATTGATCGCGAGCAAGTTGGCACGGCTTGTGAAAAATTTTTTTACGG
CGAAGACGAAGATGAACTTAATGAACTTAAGGCGGATATGACCGAGTTCC
TAATGAAGAAGTTTGATCTGGACAAGGACGGAGTCATTTCCTACGAGGAC
TATTCTACTGTCGTGGAACAGCAGCCAATTTTAGTGGAGTTCTTAGGTTG
GTTATTTCCATCAAAAGAGGACAAAGATCTTATGGCCCATTGCATTAACC
TGCAACTTAAAATGAATTAAAAGCTTTCTAGACCAT
BS20266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sowi-RA | 654 | CG15178-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
| CG15177-RA | 678 | CG15177-PA | 1..627 | 17..640 | 715 | 74.6 | Plus |
| CG15177-RB | 654 | CG15177-PB | 1..455 | 17..468 | 470 | 74.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sowi-RA | 830 | CG15178-RA | 148..802 | 17..671 | 3275 | 100 | Plus |
| CG15177-RA | 1013 | CG15177-RA | 131..758 | 16..640 | 720 | 74.7 | Plus |
| CG15177-RB | 989 | CG15177-RB | 131..586 | 16..468 | 475 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6627391..6627753 | 379..17 | 1815 | 100 | Minus |
| 3R | 32079331 | 3R | 6626958..6627145 | 671..484 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 6627232..6627342 | 485..375 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 6628871..6629191 | 336..16 | 450 | 76 | Minus |
| 3R | 32079331 | 3R | 6628459..6628615 | 640..484 | 260 | 77.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:50:47 has no hits.
BS20266.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:04 Download gff for
BS20266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowi-RA | 148..799 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:26 Download gff for
BS20266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowi-RA | 148..799 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:18 Download gff for
BS20266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowi-RA | 148..799 | 17..668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:18 Download gff for
BS20266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6626961..6627144 | 485..668 | 100 | <- | Minus |
| 3R | 6627233..6627340 | 377..484 | 100 | <- | Minus |
| 3R | 6627394..6627753 | 17..376 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:26 Download gff for
BS20266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2452683..2452866 | 485..668 | 100 | <- | Minus |
| arm_3R | 2452955..2453062 | 377..484 | 100 | <- | Minus |
| arm_3R | 2453116..2453475 | 17..376 | 100 | | Minus |
BS20266.pep Sequence
Translation from 16 to 669
> BS20266.pep
MENLDATIDSMENSRFAALYGSLIKELTLTSELSQTDITCLLVVYYKFSK
ANGPQCKQMTKKQFYQIFLVLFNVASVQVIERTLLAITKDTKYVSPRAWI
HLFDLYTTNDIQVRMRFAFEVYDTKGTGVIDREQVGTACEKFFYGEDEDE
LNELKADMTEFLMKKFDLDKDGVISYEDYSTVVEQQPILVEFLGWLFPSK
EDKDLMAHCINLQLKMN*
BS20266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sowi-PA | 217 | CG15178-PA | 1..217 | 1..217 | 1121 | 100 | Plus |
| CG15177-PA | 225 | CG15177-PA | 1..218 | 1..217 | 873 | 75.2 | Plus |
| CG15177-PB | 217 | CG15177-PB | 1..210 | 1..217 | 815 | 72 | Plus |
| sunz-PA | 220 | CG15179-PA | 1..211 | 1..213 | 529 | 45.1 | Plus |
| d-cup-PA | 219 | CG14387-PA | 3..206 | 4..209 | 420 | 37.9 | Plus |
