Clone BS20277 Report

Search the DGRC for BS20277

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:202
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG31677-RA
Protein status:BS20277.pep: full length peptide match
Sequenced Size:509

Clone Sequence Records

BS20277.complete Sequence

509 bp assembled on 2011-01-07

GenBank Submission: KX805104

> BS20277.complete
GAAGTTATCAGTCGACATGCAAATTAACGCTCGAGATGGGATTCAAATGA
ATAAGGCTCCTGGCCAGAATAGAATATTGATGTTATCCCCAGCTAGACCA
GTTAGCTGCCGACGTTGTGTGGTTATCAATATGGCCAATATTCCAATCCA
CAGCACATCCGCACATCAGCTGAGATACAAAGAGCCACACTCGCATATTG
TATCTGCATTTATGAAAATGCAAACTACAAGTACGGGGTCGGGGAAAACG
CCAGCTGAAACTATCAAAATGCATGCCAAGAGGCAAACAACAAAAGCAGG
CAACACGAGCTGCCGCAACATGGCAAACATGAAACCGAAACCGAAAACTG
TAACTAAAACTGCGGCCAAAATCACCGCCCATGCCACCCACTCGAATGCT
AACTTCAGGCAGCCAAAACGGGCAGCAAAAAAGCGAGAACGGGCGAAATT
TGCATGCATATTTACAAACTTTCGTTCGGAAAAGTCAGAATAAAAGCTTT
CTAGACCAT

BS20277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31677-RA 477 CG31677-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31677-RA 662 CG31677-RA 97..573 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20603624..20604100 493..17 2385 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:51:43 has no hits.

BS20277.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:12 Download gff for BS20277.complete
Subject Subject Range Query Range Percent Splice Strand
CG31677-RA 97..571 17..491 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:36 Download gff for BS20277.complete
Subject Subject Range Query Range Percent Splice Strand
CG31677-RA 97..571 17..491 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:36 Download gff for BS20277.complete
Subject Subject Range Query Range Percent Splice Strand
CG31677-RA 97..571 17..491 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:36 Download gff for BS20277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20603626..20604100 17..491 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:36 Download gff for BS20277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20603626..20604100 17..491 100   Minus

BS20277.pep Sequence

Translation from 16 to 492

> BS20277.pep
MQINARDGIQMNKAPGQNRILMLSPARPVSCRRCVVINMANIPIHSTSAH
QLRYKEPHSHIVSAFMKMQTTSTGSGKTPAETIKMHAKRQTTKAGNTSCR
NMANMKPKPKTVTKTAAKITAHATHSNANFRQPKRAAKKRERAKFACIFT
NFRSEKSE*

BS20277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31677-PA 158 CG31677-PA 1..158 1..158 820 100 Plus