BS20289.complete Sequence
1534 bp assembled on 2011-01-07
GenBank Submission: KX804480
> BS20289.complete
GAAGTTATCAGTCGACATGTTGGCCCTTGTCGTTTTTCTGATTGCCAGTT
GTTTGACCATTCAAACGGCAGCCACTACGACACCAAGTCCAGCGGTCACC
GAAGCTGGTCACCCATCTCCTGGAGGTTCGCAAGGTCAAGAGGAGCCAGG
AAACAGCTCCTCAACGGAACTACCGGACTACTGCGATCCCTCCTTGTGCC
ACAAAGAACTCAAACATGTGGCTTGCAACGCATCAATCGAACTGCACGAC
AAGTGCTCTCTGGACGCTGAGCTCATAGTGATAAGCCCAAAGGTGGAAAG
ATTCCTATTAAGGCGATTTAATGAGTTGAGGGATAGCGTGGCCAAAGGAG
GGTTCAACGGACTGAGTCCTGCCAGTCGGATGGGCACCTTGAAGTGGAAC
CCGGAACTGGCCTACCTAGCTGAATTCAATGTGAGGGATTGTGTCCTGAG
GCACGACGAGTGCCGGAACACGAAGTTCACGCAAAACGCTGGCCAGACGG
TTGGGTATCGAGGCATTAAAGGAAAATTGCCAGAGTTGGAGGATATCCTT
AGGGATATCATAGGGGTGTGGTTGCGGGAAAAATCCAGAACTTCGATGGT
GAACATCATGAAGTATGTCGAGCAGGAATCTCAGTCGCCGAAGTACAACT
TTTTACAGATCGTGCTGGAGAACGCTGAATCCGTGGGCTGTGCCATCGTT
CAGCAGTCCCGGCATGGCTGGATTCAGACGTTTTTCGCGTGCAACTATGG
CCACGCCCCGGTTGTGGGCTCGCCCGTCTACGAGCCCGGGAAAAAGGCGG
CGGAGTCCTGCAAGACCGGAGCGAACCCGAAATATGCACATCTCTGCGCC
GAGTCCGAGGTCTACGAGAAGGTTACGCCGAAAGCAGGAAACGCGTCCAG
TCCCGAAATTAAAACTAGAACTCTTGGAAAACGGGACTTCGTCATGCTCA
ACGGCGAAAACGCTGATGGAACGCCGCCAGCTGAAGGTGGGGCACCAGCA
CCAGCAGCCGATGGAGCAGCAGCAGCGCCTGCCGCCGAAGGAGGAGCAGC
TGCACCTGGAGAAGCTGCAGCCACTCCAGCAGTCGACGGAGCAGCGCCAG
GAGCCACTCCAGGAGTCACCCCGGTGGAGGGAGAAGGCTCCACTCCTGCA
CCAACAGCTGGAGGGACACCCGCTTCCGAATCGCCAGGAGGGGAAGAAGC
TCATGCCGAAGGGCTACTGGAACCCATGCCAAAGCCTCTGGACAGGGCTG
CGCTGGAGAAGAAGTTCGCCCGCTTCCTGGCGCTGATAAAGCGGGCTGAG
ATGTTCCATGGTCGCCGGAAGATCGTGGTCATATCCAGCAATCACGAGGT
GGATGATGACCGCGTGCAACAGGAAGGCGCAGAAGGCGACGCAACTATTA
GAACCATGGAAAGGGCTTTCTCCAGACGCAGAGCAATAATGAGACGCTCG
ATAGGTAGCCACATGCGCAGTCGTAAGCCAAGTGGCTTTTGGGCTCCGCA
ATGGATAGCTATGCCTTAAAGCTTTCTAGACCAT
BS20289.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42564-RA | 1503 | CG42564-PA | 1..1501 | 17..1517 | 7505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42564-RA | 1587 | CG42564-RA | 5..1512 | 17..1524 | 7525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6376383..6377273 | 634..1524 | 4440 | 99.9 | Plus |
| 3R | 32079331 | 3R | 6375020..6375416 | 239..635 | 1985 | 100 | Plus |
| 3R | 32079331 | 3R | 6374479..6374701 | 17..239 | 1115 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6929 | 949..1113 | 206 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2414 | 993..1082 | 162 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6945 | 978..1121 | 154 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2419 | 992..1081 | 153 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1149 | 993..1081 | 148 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2417 | 992..1082 | 140 | 61.5 | Plus |
BS20289.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:09 Download gff for
BS20289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42564-RA | 10..1505 | 22..1517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:31 Download gff for
BS20289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42564-RA | 10..1505 | 22..1517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:28 Download gff for
BS20289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42564-RA | 10..1505 | 22..1517 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:28 Download gff for
BS20289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6374484..6374700 | 22..238 | 100 | -> | Plus |
| 3R | 6375020..6375414 | 239..633 | 100 | -> | Plus |
| 3R | 6376383..6377266 | 634..1517 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:31 Download gff for
BS20289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2200206..2200422 | 22..238 | 100 | -> | Plus |
| arm_3R | 2200742..2201136 | 239..633 | 100 | -> | Plus |
| arm_3R | 2202105..2202988 | 634..1517 | 100 | | Plus |
BS20289.pep Sequence
Translation from 16 to 1518
> BS20289.pep
MLALVVFLIASCLTIQTAATTTPSPAVTEAGHPSPGGSQGQEEPGNSSST
ELPDYCDPSLCHKELKHVACNASIELHDKCSLDAELIVISPKVERFLLRR
FNELRDSVAKGGFNGLSPASRMGTLKWNPELAYLAEFNVRDCVLRHDECR
NTKFTQNAGQTVGYRGIKGKLPELEDILRDIIGVWLREKSRTSMVNIMKY
VEQESQSPKYNFLQIVLENAESVGCAIVQQSRHGWIQTFFACNYGHAPVV
GSPVYEPGKKAAESCKTGANPKYAHLCAESEVYEKVTPKAGNASSPEIKT
RTLGKRDFVMLNGENADGTPPAEGGAPAPAADGAAAAPAAEGGAAAPGEA
AATPAVDGAAPGATPGVTPVEGEGSTPAPTAGGTPASESPGGEEAHAEGL
LEPMPKPLDRAALEKKFARFLALIKRAEMFHGRRKIVVISSNHEVDDDRV
QQEGAEGDATIRTMERAFSRRRAIMRRSIGSHMRSRKPSGFWAPQWIAMP
*
BS20289.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42564-PA | 500 | CG10284-PA | 1..500 | 1..500 | 2618 | 100 | Plus |
| CG17575-PA | 291 | CG17575-PA | 24..283 | 54..284 | 374 | 31.5 | Plus |
| CG17575-PB | 298 | CG17575-PB | 24..290 | 54..284 | 363 | 30.7 | Plus |
| CG3640-PA | 296 | CG3640-PA | 25..251 | 54..284 | 357 | 34.7 | Plus |
| CG9822-PA | 263 | CG9822-PA | 17..256 | 45..283 | 356 | 32.5 | Plus |
