BS20301.complete Sequence
527 bp assembled on 2011-01-07
GenBank Submission: KX806386
> BS20301.complete
GAAGTTATCAGTCGACATGGATTTCGAATTCCTTACTCCGCCGCCAGAGG
AACGGACCATTCGCACCCACAATCTGACCGAAGAACAGGTCAAGGATTTG
GAGATTGCCTTTTCCCTGTTTGACGACCAAGACACTAAGGTTATTCCTAT
AACAAATCTCAGGCAACTAATGCTGTCTGTGGCCCACTATCCCAGTGATA
TGGAATTGCAGGAAATTCAGGCCGAGATCGATGCTGATGGATCCGGTGAG
TTATATCTCAGCGATTTCCTTCACATCATGTCTCAGAGGTACGCAAACAT
GTCTACCGAGGATGAAATTATAGCTGCATTCAGAGTCTTTGACAAAGAAG
GAACCGGCTTAATATCTGAATCGGAATTTCGTCACATAATGCAGAACATG
GGGGAGCAATTGACGGATGATGAGGTGGAGGAGATCATCCGTGATGCAAA
TTCTGATTTGGAAGGCAATATAGACTATGTGCGATTTGTCAGAATGATGT
CCACTACATAAAAGCTTTCTAGACCAT
BS20301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17770-RA | 495 | CG17770-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
| CG5024-RB | 498 | CG5024-PB | 209..351 | 222..364 | 190 | 75.5 | Plus |
| CG5024-RA | 498 | CG5024-PA | 209..351 | 222..364 | 190 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acam-RB | 1224 | CG17769-RB | 78..573 | 16..511 | 2480 | 100 | Plus |
| CG17770-RA | 1224 | CG17770-RA | 78..573 | 16..511 | 2480 | 100 | Plus |
| CG5024-RB | 643 | CG5024-RB | 318..460 | 222..364 | 190 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25811988..25812483 | 16..511 | 2480 | 100 | Plus |
| 3R | 32079331 | 3R | 25811413..25811555 | 222..364 | 190 | 75.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:28:04 has no hits.
BS20301.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:48 Download gff for
BS20301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17770-RA | 79..571 | 17..509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:15 Download gff for
BS20301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17770-RA | 79..571 | 17..509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:00 Download gff for
BS20301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17770-RA | 79..571 | 17..509 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:00 Download gff for
BS20301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25811989..25812481 | 17..509 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:15 Download gff for
BS20301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21637711..21638203 | 17..509 | 100 | | Plus |
BS20301.pep Sequence
Translation from 16 to 510
> BS20301.pep
MDFEFLTPPPEERTIRTHNLTEEQVKDLEIAFSLFDDQDTKVIPITNLRQ
LMLSVAHYPSDMELQEIQAEIDADGSGELYLSDFLHIMSQRYANMSTEDE
IIAAFRVFDKEGTGLISESEFRHIMQNMGEQLTDDEVEEIIRDANSDLEG
NIDYVRFVRMMSTT*
BS20301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17770-PA | 164 | CG17770-PA | 1..164 | 1..164 | 833 | 100 | Plus |
| CG5024-PB | 165 | CG5024-PB | 3..165 | 2..164 | 516 | 58.9 | Plus |
| CG5024-PA | 165 | CG5024-PA | 3..165 | 2..164 | 516 | 58.9 | Plus |
| Cam-PD | 149 | CG8472-PD | 5..148 | 20..163 | 337 | 45.1 | Plus |
| Cam-PC | 149 | CG8472-PC | 5..148 | 20..163 | 337 | 45.1 | Plus |
