BS20302.complete Sequence
572 bp assembled on 2011-01-07
GenBank Submission: KX801390
> BS20302.complete
GAAGTTATCAGTCGACATGTGTTTGAAAGCACGCCATCCCAAAACGAAAC
GCGATCTGATGAACATGAAAACTTTTTGTTTATGGATAGTTCCAGTGCTG
ATCCTGCTGCAGCTGGGAATCGAGCAAGTGGAGTCCAAAAAATATCAGCG
CTGCGAACTCACAAGAGTTTTGGTGGAGAACTACAACTTCGACAAGACCT
TCATTTCCAACTGGATCTGTTTGGTGGAGCACGAAAGTTACTTGGACACC
ACCAAAGTAACGAAAAAGGGAAACGAAAGCAAGAACTATGGCCTCTTTCA
GATCAACAGCAAGGATTATTGCAGCGAAGGACGAAAAGGAGGGCAGTGCA
ATATGAAATGTGAAGACTTCTCCAATGACGACATCAGTGACGACATCGCC
TGCGCCAGAATGATCCAGGAACGCGAGGGCTTCAAATACTGGAAGGGCTG
GGATCGCTTCTGCCGCAATCCACAGAATCTGCCCAATCTCCGCGTGGCCT
GCAACCTGCGTAGCCTGTCTCCAGTGCGATCACCTCGTGGATTCTTAACG
GGCTGAAAGCTTTCTAGACCAT
BS20302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16799-RB | 540 | CG16799-PB | 1..540 | 17..556 | 2700 | 100 | Plus |
CG16799-RA | 540 | CG16799-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16799-RB | 1288 | CG16799-RB | 91..631 | 17..557 | 2705 | 100 | Plus |
CG16799-RA | 720 | CG16799-RA | 91..631 | 17..557 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20653214..20653407 | 557..364 | 970 | 100 | Minus |
2R | 25286936 | 2R | 20653744..20653904 | 213..53 | 805 | 100 | Minus |
2R | 25286936 | 2R | 20653540..20653692 | 365..213 | 765 | 100 | Minus |
2R | 25286936 | 2R | 20654970..20655006 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:28:08 has no hits.
BS20302.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:49 Download gff for
BS20302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16799-RA | 86..624 | 17..555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:17 Download gff for
BS20302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16799-RA | 91..629 | 17..555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:01 Download gff for
BS20302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16799-RA | 91..629 | 17..555 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:01 Download gff for
BS20302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20653216..20653405 | 366..555 | 100 | <- | Minus |
2R | 20653540..20653692 | 213..365 | 100 | <- | Minus |
2R | 20653745..20653903 | 54..212 | 100 | <- | Minus |
2R | 20654970..20655006 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:17 Download gff for
BS20302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16540721..16540910 | 366..555 | 100 | <- | Minus |
arm_2R | 16541045..16541197 | 213..365 | 100 | <- | Minus |
arm_2R | 16541250..16541408 | 54..212 | 100 | <- | Minus |
arm_2R | 16542475..16542511 | 17..53 | 100 | | Minus |
BS20302.pep Sequence
Translation from 16 to 555
> BS20302.pep
MCLKARHPKTKRDLMNMKTFCLWIVPVLILLQLGIEQVESKKYQRCELTR
VLVENYNFDKTFISNWICLVEHESYLDTTKVTKKGNESKNYGLFQINSKD
YCSEGRKGGQCNMKCEDFSNDDISDDIACARMIQEREGFKYWKGWDRFCR
NPQNLPNLRVACNLRSLSPVRSPRGFLTG*
BS20302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16799-PB | 179 | CG16799-PB | 1..179 | 1..179 | 980 | 100 | Plus |
CG16799-PA | 179 | CG16799-PA | 1..179 | 1..179 | 980 | 100 | Plus |
CG16756-PA | 152 | CG16756-PA | 18..152 | 27..164 | 423 | 50 | Plus |
CG11159-PA | 146 | CG11159-PA | 14..143 | 27..158 | 332 | 49.2 | Plus |
CG8492-PD | 1360 | CG8492-PD | 594..720 | 39..158 | 217 | 36.7 | Plus |