BS20303.complete Sequence
1439 bp assembled on 2011-01-07
GenBank Submission: KX805549
> BS20303.complete
GAAGTTATCAGTCGACATGGCCACCGCCACCGTTGGTTCATCCAGATCCG
CAACCACATCCGCAACCGCATCCGCATGCTCATCCAAATCCAAGAACCTA
AAGAATCCGGCGCCGCAAATAAAAAGGGGACAGCGGATCCTCACGGAGAA
ACCATTCGCCTTCGTCTTGAAATCACAGTACCGCCTGGAGCGGTGCGATA
ACTGCCTGGAGGCGACCAAGGTGCTGAAGTGCTCCAACTGCAGGTATGTG
TCCTACTGCCACCGCTCATGCCAGATGCAAGCTTGGGGCCAGCACAAGCA
CGAGTGTCCTTTCCTCAAGAAGGTGCATCCTCGAGTTGTGCCCGATGCTG
CCCGAATGCTCTGCCGACTGATCCTGCGCCTGGAGCACGGCGGAGACCTG
ATCCGCGGCTATTACACCGAGCACGGCTCCCGCAAGTTTCGCGATCTCAT
GTCCCATTACGCCGAAATCAAGAACGATCCCATGCGACTGGAGCACTTGG
ACTCGCTGCATGCCGTCCTCACCGATATGATGGCCGAGAGTCCCAGCACG
GTGCCAAACAAGACGGAACTGATGAGCATCTATGGTCGCCTGATCACCAA
TGGCTTCAATATCTTGGACGCCGAGATGAACTCAATTGCCACGGCCATAT
ATCTGGGCGTCTCGATTACGGACCATAGCTGCCAGCCAAATGCGGTCGCC
ACCTTCGAGGGCAACGAGCTGCACGTCCACGCGATCGAGGACATGGAATG
CCTGGACTGGTCGAAAATCTTCATCAGCTACATCGACCTGCTCAATACGC
CGGAGCAGAGGCGTCTGGACCTCAAGGAGCACTACTACTTCCTATGCGTG
TGCAGCAAGTGCACGGATGCCAAGGAATCGAAGGAGATGCTGGCTGCCCT
GTGTCCCAATCGCAACTGCGGTGCGGGAATCAGTGTGGACCGCAATAATT
GCCCGCGATGCGATGCCGGCATCAGTCCCAAGTTGAGAAATGCCTTCAAC
GAGGCGATGACTCTGACCCGGCACAATCTGGAGAACATGAAGGACGTGGC
CTATCTCGATGTGTGCAAGGTGTGTCTGGACAAGCAGACTGGCGTGTTCC
ATCCCCTGAATGTGTGGTACGTCAAGACGCTCGATGCGGCCTTCGAAGCA
GCCATCGAAGTGGGCAAGTGGAGCGACGCCCTGGATTACGGGCAACGTTT
GCTGCCAGGCTTTCGAAAATACCACGGACCCTGGAATCCGCTATTGGGCC
TGCTTCACATGAAGCTGGGCAAGATTCAGCTCTACGAGGGCCATTCCAAG
GAGGCACTGCACCATCTGGAGGAGGCCCAACGCATCCTAACCGTCACCCA
CGGCCGAGATCACAGACTGCTTACTGAGCAGCTATACATGCTCGTTCTAC
AAGCGCGACAAGAGGCGCACTAAAAGCTTTCTAGACCAT
BS20303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bzd-RB | 1407 | CG13761-PB | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bzd-RB | 1762 | CG13761-RB | 206..1616 | 13..1423 | 7040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2607262..2607724 | 1052..590 | 2315 | 100 | Minus |
| X | 23542271 | X | 2606826..2607196 | 1423..1053 | 1855 | 100 | Minus |
| X | 23542271 | X | 2608171..2608412 | 455..214 | 1210 | 100 | Minus |
| X | 23542271 | X | 2608470..2608671 | 214..13 | 995 | 99.5 | Minus |
| X | 23542271 | X | 2607970..2608103 | 589..456 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:28:13 has no hits.
BS20303.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:50 Download gff for
BS20303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bzd-RB | 1..1405 | 17..1421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:19 Download gff for
BS20303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bzd-RB | 210..1614 | 17..1421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:02 Download gff for
BS20303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bzd-RB | 210..1614 | 17..1421 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:02 Download gff for
BS20303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2608471..2608667 | 17..213 | 100 | | Minus |
| X | 2607970..2608103 | 456..589 | 100 | <- | Minus |
| X | 2608171..2608412 | 214..455 | 100 | <- | Minus |
| X | 2606828..2607196 | 1053..1421 | 100 | <- | Minus |
| X | 2607262..2607724 | 590..1052 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:19 Download gff for
BS20303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2500861..2501229 | 1053..1421 | 100 | <- | Minus |
| arm_X | 2501295..2501757 | 590..1052 | 100 | <- | Minus |
| arm_X | 2502003..2502136 | 456..589 | 100 | <- | Minus |
| arm_X | 2502204..2502445 | 214..455 | 100 | <- | Minus |
| arm_X | 2502504..2502700 | 17..213 | 100 | | Minus |
BS20303.pep Sequence
Translation from 16 to 1422
> BS20303.pep
MATATVGSSRSATTSATASACSSKSKNLKNPAPQIKRGQRILTEKPFAFV
LKSQYRLERCDNCLEATKVLKCSNCRYVSYCHRSCQMQAWGQHKHECPFL
KKVHPRVVPDAARMLCRLILRLEHGGDLIRGYYTEHGSRKFRDLMSHYAE
IKNDPMRLEHLDSLHAVLTDMMAESPSTVPNKTELMSIYGRLITNGFNIL
DAEMNSIATAIYLGVSITDHSCQPNAVATFEGNELHVHAIEDMECLDWSK
IFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDAKESKEMLAALCPNRN
CGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENMKDVAYLDVC
KVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQRLLPGFR
KYHGPWNPLLGLLHMKLGKIQLYEGHSKEALHHLEEAQRILTVTHGRDHR
LLTEQLYMLVLQARQEAH*
BS20303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bzd-PB | 468 | CG13761-PB | 1..468 | 1..468 | 2505 | 100 | Plus |
