BS20307.complete Sequence
1292 bp assembled on 2011-01-07
GenBank Submission: KX800993
> BS20307.complete
GAAGTTATCAGTCGACATGCCTAAGGAAACCGTAATTTTGGCTTACTCCG
GTGGCCTGGACACTAGTTGCGTCCTCAAGTGGTTGCTGGACAAGCAGTAT
GAGGTCATTTGCGTCCTGGCCGATGTAGGCCAGAAGGAAGATTTCACCGC
CGCCGAGAAGAAGGCTCTTAAGATTGGCGCAAAAAAGGTTATCGTGGCCG
ATGTCAAGCAGTCCTTCGTCGAGGACTATATCTGGCCGGCCGTACAAATG
GGTCTGGTGTACGAGGAGCGCTATCTACTGGGCACTTCTCTGGCCAGGCC
CTGCATCAGTGTAGCCCTGATGGAGGTCGCCCGCGAGTATGGAGCCAAGT
ATCTGGCCCACGGAGCCACCGGAAAGGGAAACGACCAGGTGCGCTTCGAG
TTGTGCGCCTACGCCCTGAAACCGGATCTGAAGATCATCGCTCCCTGGAG
GGATGTAGAATTCTGCTGCCAGTTTCAAGGTCGACAGGACCTCATTGCCT
ATGCCCAGCAACACGGAATCGAGGTAAGCGCCAAGCCAGCCACACCCTGG
AGCACCGATGCCAACATCCTGCACATCAGCTACGAGTCCGGAATACTCGA
AGATCCCAACACAGTGGCTCCGGAAAATCTCTACGAGATGACAGTCGATC
CCCTGACAAGGGCTCCACGGGATCCGGTTCACTTGGTCATTCAATTTGAT
CGGGGACTGCCCTCCAGTGTGGAGGATTTGCCCGGCGGTCGGGTCTACAC
TAAACCCCTGGAGATGCTAGATTTCCTCAATAAGCTTGGCGGATCATATG
GCATTGGGCGGATTGACATCGTGGAAAATCGCTTTGTGGGACTGAAGTCC
CGGGGGGTGTACGAGACGCCTGGAGGCACCATCCTCTTTGCTGCCCACCA
GGACCTCGAGGTGTTTGCTTTGGACCGCGAAGTACTCCGCACCAAGCAGG
TTCTCCGGGATCGCATGGCCGACTACGTGTACAATGGCTTCTGGTTCAGT
CCCGAGGCAATTTATGCCCGTAAATGTATCGAGTTGGCCGAGCAGCGGGT
CTCCGGGAAGGTCACCGTGGAACTGGCCCCAGGCTATTGCCGTGCCATCG
CCCGAAAGGCGGCGAAGGATGTGGGAGCTCTTTACAACGAACAGCTCGTA
TCTATGGACGTCCATGGTGGCTATGTGCCGCAGGATGCCGGTGGATTTAT
CGCCATCAATGCGGTCCGAATCAGGGAACATGTCCGAGCGTTCGGTGCCT
ACGATGTGCCAACGAAGAAAAACTGAAAGCTTTCTAGACCAT
BS20307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1315-RB | 1260 | CG1315-PB | 1..1260 | 17..1276 | 6300 | 100 | Plus |
| CG1315-RA | 1260 | CG1315-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1315-RB | 1456 | CG1315-RB | 49..1309 | 17..1277 | 6305 | 100 | Plus |
| CG1315-RA | 1409 | CG1315-RA | 49..1309 | 17..1277 | 6305 | 100 | Plus |
| CG31286-RB | 1834 | CG31286-RB | 896..1742 | 1278..432 | 4220 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6642409..6643254 | 1277..432 | 4230 | 100 | Minus |
| 3R | 32079331 | 3R | 6643864..6644111 | 433..186 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 6644213..6644386 | 190..17 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:28:33 has no hits.
BS20307.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:51 Download gff for
BS20307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1315-RA | 49..1307 | 17..1275 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:24 Download gff for
BS20307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1315-RA | 49..1307 | 17..1275 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:11 Download gff for
BS20307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1315-RA | 49..1307 | 17..1275 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:11 Download gff for
BS20307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6642411..6643252 | 434..1275 | 100 | <- | Minus |
| 3R | 6643864..6644109 | 188..433 | 100 | <- | Minus |
| 3R | 6644216..6644386 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:24 Download gff for
BS20307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2468133..2468974 | 434..1275 | 100 | <- | Minus |
| arm_3R | 2469586..2469831 | 188..433 | 100 | <- | Minus |
| arm_3R | 2469938..2470108 | 17..187 | 100 | | Minus |
BS20307.pep Sequence
Translation from 16 to 1275
> BS20307.pep
MPKETVILAYSGGLDTSCVLKWLLDKQYEVICVLADVGQKEDFTAAEKKA
LKIGAKKVIVADVKQSFVEDYIWPAVQMGLVYEERYLLGTSLARPCISVA
LMEVAREYGAKYLAHGATGKGNDQVRFELCAYALKPDLKIIAPWRDVEFC
CQFQGRQDLIAYAQQHGIEVSAKPATPWSTDANILHISYESGILEDPNTV
APENLYEMTVDPLTRAPRDPVHLVIQFDRGLPSSVEDLPGGRVYTKPLEM
LDFLNKLGGSYGIGRIDIVENRFVGLKSRGVYETPGGTILFAAHQDLEVF
ALDREVLRTKQVLRDRMADYVYNGFWFSPEAIYARKCIELAEQRVSGKVT
VELAPGYCRAIARKAAKDVGALYNEQLVSMDVHGGYVPQDAGGFIAINAV
RIREHVRAFGAYDVPTKKN*
BS20307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1315-PB | 419 | CG1315-PB | 1..419 | 1..419 | 2184 | 100 | Plus |
| CG1315-PA | 419 | CG1315-PA | 1..419 | 1..419 | 2184 | 100 | Plus |
