BS20308.complete Sequence
5246 bp assembled on 2011-01-28
GenBank Submission: KX805775
> BS20308.complete
GAAGTTATCAGTCGACATGTTGAAAAAATTCGTGGAAGTGAACGCCGAGT
GCAGTCCCTCTAACAATCCCTATGAGATTCGTACCTTTCTGGGCAACGAA
ACGTCGCCGGAATGGAAGGCGGAGAACTGTCCGCCCCGCGATCGCGTCTG
TCAGAAAAAGCCACCCAACTCCACGATCTCCCAAGTGCTAACCATCGAGG
ATGAGCTGCGTCGCATCCACCACAAGGCGGAGGAATCCCGCTTCACAAAG
CCCTATAAAAAGAAATGTGACCTCTACGACGATTTAACCATGTGCATCGT
GCCACAACGAACTCCAGCGGAGCTAAAGACCCATGCCGAGATGCGAGAGC
GAATTCTGGCCGCGCGCAAGGACTTTGGACTCGTCGAGCACGACGCCAGG
GTCGATAGGCCATGTCCCAAAGATCTCGTCGTCCTCAACAGTCCCATGGA
CATGGGCGAGGAGGAACAACAGGCGGAGGAGGGCGAGGAAGAGGAGGAGG
GCGAGGTCAAGCCACAACTAGCCACTCCAGAATGCAGTTCTGATATGATA
ATTATTCCGGACAAACGCATGTTGGAGCTAAAGCGTCCCAAGAGTCGCAT
ATACCTAAACGAAACTGAAGTTGGACCCTTGGAGGAGCTCCCCTTTTCAT
CTTACAATCCGCGAATCCTGCAAGAAGGCTTAGAAGGAGAAAACCTCAAG
ACCTTCGATATCATTGAGGGCTGCAGTCCACAGGATTTGTGGACCTGGAA
TGTGGGCTACCAGAAGAGAGAGGAGCATATGGATCAGGAGTTCATATCCG
CCTCCCTGCCGAAATATGAAAACGACGGCGAACTTACGCTCTATAATATA
CCACAACAGCTGGAAAAGACGTTTACTGCTGAGATTGTGTTTGGGAATCG
GAACATCTATCCTGAACCAAAGAAGGAGCCCAACCGTTTGCAGTACTATT
ATCGGCCTAGTGAAATCGGTGCCATTATAGTCGCTTTCGTAGAGACCTTT
CGTTTGAATCCCGATTTCTGGACGGGATCTACAATGGATGGGATTCTAAA
GCGCGGAGTGAAATTGACCAAAAAGAGCGCCGACCTAAACTACAAGTCAG
ACGTGAATGATTTCGATATAATCCAACAGGTTGCGGAACGAGACGCCGCC
GTTGAGATTAAGATACACTTCTCGGGACTTTTGAAAAACGAACCAAATAT
GTACAAAGCACTTTCCCTATTCTTCTCCAAATACAATGCCTGCATCTTTA
CGTCCCGGGATCTCTTCCTGCTGATCTGGAAGCGCTGCTTAAACTCGTAC
TATATCTTCGATCCCAATGGACGTGATGAAAACTGCGAACGGAATTTCGA
GGAGGGAAAGTGCTCACTGATGGCCACTCGCTATACGGAGCACTTGGTCC
ATTTGATCACCAAGTTTAGCGATCTGCAGCCGCAGGATGAATTCAATATT
TTTGAGATATCGCTGACTCAGTATGGAAAACTTAAGGAGCCACCAATTAA
TTCGGCGGAAAACGAGGAGTATCACAAACTCTGGGCGCCAGTCAATGAGA
ACTTTGCTGTAAAAACTGCGGCCACAGGTGGCATTCACCAACCGATCTCC
GGAAATGAGAAGAATGCATCGCTAGTTGTGTCATTGATAGCTCTGATTTA
CTCGGAATTTGAGCTAGCCAAGCTATGGAAACCGGGTACTGTGGATGACA
TCATAAGGTATGGTGTAGCCTACTACAAAACCCTTCGGAAGAAGTTCCGC
CTGGATGGAAAACGCTGGAAGAATAAGAAGCCACATTTGAATGTGGTGGA
TCTGCCAGAAATGTTTCTCATGGGTGCATTTAAGGCCACCGTTCGAAAGC
ATCCATTCATGATCAATGGTCATGTGGCGGATTGCAGGAACTATTTGGAA
TCCCAGCTAACGATGGCACTGCACCAGTTGTTCAACTTGCCCCAGTGGCC
ATCTGCCCTGCTTCAGATCGATAATTCAGTGATGGCTGTATGGCGGGATA
GGGAGTTCTTCTATGTCTTCGATCCCTTCCGGCGGAATCGAACTGGCCTG
GTGGTGGATCCCGATGACTATAGCATAAAGGGATTGGCCGTGCTCCAATT
GCACGCCACCTTCGACTCCTTTGTCCGTGTAATCTACATGAATGCCCTGA
AGATGCGACGTGGTGGTAAGTTCTTTATCCATGGCGTGAGGACAGGCTGC
ATCCGACCGCTGCAGGTGATGACCCCGCAGACAAACAGATTCCCGGGATT
GCAGATGGGTCTGCCCACCTTCACGGATGAACCACCAATGCCGGAGCTGA
AACAGAAGAAGAGTATTGAGAGTATACCGGAAGAGGATCGCTTCCCCACC
GTCGATGAAAAGGAAATGGTAGAGGAGCTGATCAATATGATCATCAATAG
TATTATTAAGGAACTGCCGGAACCACAACCCAAGAGACCACATCTCTATA
AGCCGGCCCAAAAGGTCCTCCTGCGCTCGGATCAAGAGAATCTGAAGGCT
CTGCGGCTAAGGATCAAGCGGGGCTATGAGCTCGGCCAGGAGGAGGAGGA
GGATCTGAAGAGAGTGTTAACGGTGGAGGAGGAGGTGGCTCTCAAGAGCA
ACTTTAAGGCGTTACCGGACGGCTCCTGGATCATTGTGGGAACCACCCAA
CTTCCCCAGTTGGACGAGGAGATGGCCAAACTGGGAGGACTCCTGGCTGC
TTTGGTAGCCATGGCTGTTTCAGCAAAGTATAAGCTGTCCACCTGGAATT
CTGAACTAATCGAGTTTAGTTTGGAATCTGCAAACAGCTTTGGAGAAGAT
TACCAAAACTACGAGTACATATTGGCTTGCCTATTGGCCAAGAAATTACC
AGATATTGCCATTGGCGAGAGCAACTTCAGTTTGGAGGTGAAGAAGGTGG
TCAAATCCTCGATTATGGTTCCCCTTCGGCAAGTCCTTGTGGATCTACTT
GTGGACAATAATAGGCTGCTACTCGTTTGCCAGCGTTTCTCCTGCGTAAT
CTTTAAGCGCTACAACTTTGTATACATGTTCATCGGCTTTCCCTGCAACG
CAATTGGCTATAGAAAGGGTGGTTCCGGTCCAGCTTGTCTCCTTCGATTT
GTGGAACTAGATGCATTAATCAAGCGCATTGAATTCGGCTGCAATCCGCA
GGGTTGTTCGGTAATGAACTTCATCGTGGCCTGCGTCCAAATGGTGGATA
ATAATCTTCATGGACGCTTTAGACCTTGGAGAAAGGAGGATGATGATAAG
GAAGTCAAGCAGGAGACGGCCAGGCAGAAGAGATTGCGCGAGCAAAGACT
GGAGAAGATGCGCTACATCGACGAGGAGCTCCAAAAGGAGAAAGAGCGCA
TACAGATGTTCCTCAAGGCCAAACAGGAGCACATGGACCGCAAGGCTGGA
ATTAAACCCGAGTACAGGGACATTGGCATCGACGAGGGTGAAGGCGAGGA
GGGCGACGAGGAGGACGACATGCTTGGTGGTGAGGAGGGCGAAGAGGAAG
GGGAAGAGGAGGTGGAATTGAAGCACCTACCAGGCAAGAAGTTACCTAAG
GAAGTTCGCCGGGCATACAAGCCTCGTCCCATAATGTTTGGCTACAGAAT
GCGCGAGAAGGATTGCAACTTTAAGATCCAGGGCAGCCTGGCACTCGAGG
GACGCGACGAGGGCTCATTCAAGACCATCAAGCCGTGCTACTTTGCCTCC
GCCCTGGCCATCATCAGTTGCTCCTTGCGTCCCTTGAACCAATGGAACTC
TTACCGCATCGATAGGGTAATCAATAATGCCAAGGCGATTTCCAAGGGCG
TCTGCGAATTGGAATCAGTATTCGAACGGGTGGTCCGCCACGTCACCATT
GATGATTACGAGTTTGACATCTGGATCCGTTGCTTTGAGCCAGCTGGCAT
GTGGACTCCTACCCCGGTAAAGAAACCTGGCACTCCGGAAGTAGGTCTCA
TGATCTTCAAGAAGAAGTTCGGCAAGCTGTTGAATCTGCGTAAATATATG
ATCATCTTCACGCCCAATGGAAGCTATGCCATCTACCACGACGAGTTCTT
TCACGTCTTTGATCCCTACGGCAGTATGGAGAAACCTGGACAGGATGAGG
AAGAGCAGGACGAGGGCGATGAGGAGGGCGGTAAGAAGAAGAAAAAGAGA
TGCCCCAAGGGACCTAAGAGGTGGCCGGAAAGAAATACTGCCTCCTGGGT
TCTGCTCTATGATGTTGATTCCCTGCTTAAGTACATCGACGAACGGAGTG
CCGTTAAGAACTGGAAGGAGAAGAACCAGTATAGGTTCTTCGTGGTTGAT
GTCCTGTCACACAAAAAGGCCGCTCCGAACGCCAGAATCCTACAGCTGCT
CACCGATCTCTCGATACCAATGACATGTACAAATAAGCAGTATGGCAGTC
CGGAATACGAGATTTGTGCCACCAATGAATCCCTCGGATGGCTAGAACTG
GAGAACTGCCTGCCCGTGTGGAGCAGATTGAATCGACGGAATACGGCGGG
CAAGTATCGCAACCTGCCCATCAGCAAGATAAAGAAGTTCGACGTCGAGA
TCGAGGGTCGCCTATGGTCCCTGTGGGGCAATCTCCATCCAGAGGCTCCC
GTCTTCGAGGACGAGGTAAGGGGTCGTCAGTATCTGGGCTGCTATGTGAT
GGCCTGCTGTGCGGCCAGCGTTTATCGGTTGATGGACTGGAGTCCACATC
TCCTCGACACCATTGTGGTCAGCGGAAGCACCTACTTCAAGGAGAGCATC
GATCAGATCAGCAAAGAGGACTACGAATTCTCACTGGAGAACCTCAACAT
CGACTGCTCTATGGACACCATCAACTTTGTGGTGCATATCGAGCATGTGT
GTTACGGAAAACTGTATCGGGTCCCTACGTTCAACCGAATGAATCTATCC
GAGGCCCTGATCTACTTCTTCAGCCACTACCAGTTCGGAATTGTGAGTGT
CCGAAAACGGTCACTGGCCATTGGATTCTGCCCCAGTCACGATGGCGGAT
ACTTTATGTACGATTGCCAGGAGAAGGATCATCCACTGTTCCCCAAGCAG
CAAGGTGCTTCCTACATGCTGCGCACCCGGCACCTACAGGTGCTCCTCTA
CTGCGTAGTGGTCACCCTAAATGTGCCATTCTACAACATAGACTTCAGCA
TCCACAAGGTAGAGATGTTGCGCGAAGGAGCCACCGTGGAGAACGAAGAG
GAGGAGGGTGGCGAAGAGGGTGGTGCTTGAAAGCTTTCTAGACCAT
BS20308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32436-RA | 5214 | CG32436-PA | 1..5214 | 17..5230 | 26070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32436-RA | 5407 | CG32436-RA | 76..5289 | 17..5230 | 26070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21350549..21353013 | 943..3407 | 12325 | 100 | Plus |
| 3L | 28110227 | 3L | 21353109..21354931 | 3408..5230 | 9115 | 100 | Plus |
| 3L | 28110227 | 3L | 21344108..21344662 | 17..571 | 2775 | 100 | Plus |
| 3L | 28110227 | 3L | 21350014..21350261 | 571..818 | 1240 | 100 | Plus |
| 3L | 28110227 | 3L | 21350338..21350464 | 818..944 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:29:12 has no hits.
BS20308.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:55 Download gff for
BS20308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32436-RA | 81..5288 | 22..5229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:09 Download gff for
BS20308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32436-RA | 81..5288 | 22..5229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:19 Download gff for
BS20308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32436-RA | 81..5288 | 22..5229 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:19 Download gff for
BS20308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21350339..21350462 | 819..942 | 100 | -> | Plus |
| 3L | 21350549..21353013 | 943..3407 | 100 | -> | Plus |
| 3L | 21344113..21344662 | 22..571 | 100 | -> | Plus |
| 3L | 21350015..21350261 | 572..818 | 100 | -> | Plus |
| 3L | 21353109..21354930 | 3408..5229 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:09 Download gff for
BS20308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21337213..21337762 | 22..571 | 100 | -> | Plus |
| arm_3L | 21343115..21343361 | 572..818 | 100 | -> | Plus |
| arm_3L | 21343439..21343562 | 819..942 | 100 | -> | Plus |
| arm_3L | 21343649..21346113 | 943..3407 | 100 | -> | Plus |
| arm_3L | 21346209..21348030 | 3408..5229 | 100 | | Plus |
BS20308.pep Sequence
Translation from 16 to 5229
> BS20308.pep
MLKKFVEVNAECSPSNNPYEIRTFLGNETSPEWKAENCPPRDRVCQKKPP
NSTISQVLTIEDELRRIHHKAEESRFTKPYKKKCDLYDDLTMCIVPQRTP
AELKTHAEMRERILAARKDFGLVEHDARVDRPCPKDLVVLNSPMDMGEEE
QQAEEGEEEEEGEVKPQLATPECSSDMIIIPDKRMLELKRPKSRIYLNET
EVGPLEELPFSSYNPRILQEGLEGENLKTFDIIEGCSPQDLWTWNVGYQK
REEHMDQEFISASLPKYENDGELTLYNIPQQLEKTFTAEIVFGNRNIYPE
PKKEPNRLQYYYRPSEIGAIIVAFVETFRLNPDFWTGSTMDGILKRGVKL
TKKSADLNYKSDVNDFDIIQQVAERDAAVEIKIHFSGLLKNEPNMYKALS
LFFSKYNACIFTSRDLFLLIWKRCLNSYYIFDPNGRDENCERNFEEGKCS
LMATRYTEHLVHLITKFSDLQPQDEFNIFEISLTQYGKLKEPPINSAENE
EYHKLWAPVNENFAVKTAATGGIHQPISGNEKNASLVVSLIALIYSEFEL
AKLWKPGTVDDIIRYGVAYYKTLRKKFRLDGKRWKNKKPHLNVVDLPEMF
LMGAFKATVRKHPFMINGHVADCRNYLESQLTMALHQLFNLPQWPSALLQ
IDNSVMAVWRDREFFYVFDPFRRNRTGLVVDPDDYSIKGLAVLQLHATFD
SFVRVIYMNALKMRRGGKFFIHGVRTGCIRPLQVMTPQTNRFPGLQMGLP
TFTDEPPMPELKQKKSIESIPEEDRFPTVDEKEMVEELINMIINSIIKEL
PEPQPKRPHLYKPAQKVLLRSDQENLKALRLRIKRGYELGQEEEEDLKRV
LTVEEEVALKSNFKALPDGSWIIVGTTQLPQLDEEMAKLGGLLAALVAMA
VSAKYKLSTWNSELIEFSLESANSFGEDYQNYEYILACLLAKKLPDIAIG
ESNFSLEVKKVVKSSIMVPLRQVLVDLLVDNNRLLLVCQRFSCVIFKRYN
FVYMFIGFPCNAIGYRKGGSGPACLLRFVELDALIKRIEFGCNPQGCSVM
NFIVACVQMVDNNLHGRFRPWRKEDDDKEVKQETARQKRLREQRLEKMRY
IDEELQKEKERIQMFLKAKQEHMDRKAGIKPEYRDIGIDEGEGEEGDEED
DMLGGEEGEEEGEEEVELKHLPGKKLPKEVRRAYKPRPIMFGYRMREKDC
NFKIQGSLALEGRDEGSFKTIKPCYFASALAIISCSLRPLNQWNSYRIDR
VINNAKAISKGVCELESVFERVVRHVTIDDYEFDIWIRCFEPAGMWTPTP
VKKPGTPEVGLMIFKKKFGKLLNLRKYMIIFTPNGSYAIYHDEFFHVFDP
YGSMEKPGQDEEEQDEGDEEGGKKKKKRCPKGPKRWPERNTASWVLLYDV
DSLLKYIDERSAVKNWKEKNQYRFFVVDVLSHKKAAPNARILQLLTDLSI
PMTCTNKQYGSPEYEICATNESLGWLELENCLPVWSRLNRRNTAGKYRNL
PISKIKKFDVEIEGRLWSLWGNLHPEAPVFEDEVRGRQYLGCYVMACCAA
SVYRLMDWSPHLLDTIVVSGSTYFKESIDQISKEDYEFSLENLNIDCSMD
TINFVVHIEHVCYGKLYRVPTFNRMNLSEALIYFFSHYQFGIVSVRKRSL
AIGFCPSHDGGYFMYDCQEKDHPLFPKQQGASYMLRTRHLQVLLYCVVVT
LNVPFYNIDFSIHKVEMLREGATVENEEEEGGEEGGA*
BS20308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32436-PA | 1737 | CG32436-PA | 1..1737 | 1..1737 | 9223 | 100 | Plus |
| CG32462-PA | 284 | CG32462-PA | 36..268 | 1466..1719 | 509 | 41.8 | Plus |
| CG14402-PB | 276 | CG14402-PB | 23..269 | 1479..1715 | 385 | 38.6 | Plus |
| CG14402-PA | 276 | CG14402-PA | 23..269 | 1479..1715 | 385 | 38.6 | Plus |
| CG4669-PA | 611 | CG4669-PA | 114..518 | 323..725 | 232 | 22.6 | Plus |
