BS20309.complete Sequence
1151 bp assembled on 2011-01-07
GenBank Submission: KX801581
> BS20309.complete
GAAGTTATCAGTCGACATGAAAAAGCAAATCGTAAGGGAGTTCATAACCG
TAAAGAAGGTACTTCACCTGCCGCCGGAGCCACCCCCACCGCCGCCACCT
CCTAAGCGCCACGTTCTGGCTGTGGGCAGCTGCACCCTGGACATGATCAC
CATCGTGGATCTGCCTCTTTTTCCAGGCCAGGTGCAACGCACCACGGAGG
GAAGCTGGCGGCGCGGCGGTCCCGCTGCCAATATATGCACTGTGTGGCGG
CGACTGGGCTTGGAGTGCGAATTCCTCGGAGTTTTGAGCAGGGTTAGGGC
GTTCGAGAGCCTGTTGAATGGATTTCAATCGCAGGGAATCGACATTTCGC
ATTGCCCGCTGACGAATCACCGGCCTGCGCACCGCAGCATCATTGTCCAA
CGTAACGTGGATACGCGAACCATGCTCGAGTTCGCCAATGCCAACCAGGA
GCTCACCTACCAGCAGTTTGTGGGCGCCGTGGACTACCAGAAGTACTCGT
GGATACACTTCGAATGTCGTAATCCCGTTGAGATGCTGCGCATGGTCCTG
GCGGTCATACAATTCAACGAGCGCTGCCCCGAGTCAAGGATCACACTCTC
TGTGGATCTGGACAACTTGCGACCGGCCACCATGTTGATGGCCAGTATGG
TGGACTACGTCTTCGCCCGAAAGACCATGATGCGTACGTACTGTTTTATG
AATGGACGCGAGGTTGTTTGGGCGATTAGGAATGAAATGCGAAGAGCACG
GACTCAATGGGAAAAAAGCCAGCCCAAAAAGATGCCCTATCTACCTCCTG
ATCCCCCAGATGAGCATTCCAACGGATATTGCCCGGGACCGCTGAATAAC
CAACCCGTCGTCATATACAATAATTATATGGAAGGCGCCAGTTGCCTGAT
GGCCGACGACACCTACTTCAAGGTGGGCTCCCAGATTCCGCCCAAATTAG
TGGACGTTGTGGCCGTTAACGACACCTTCTCGGCGGCCGTGATATATGCA
CTGATTAAGGTCAAGATGCGGCTGAGGGATGCCATCGAGTACGGAACCCG
GGCGTCGTCTCTGAAGTTGACGGGAAACGGATTCGATGTGCTGCGGTGTA
TGCCCAAAGATCTGATTGGTTGTTACTATACTTAAAAGCTTTCTAGACCA
T
BS20309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7335-RA | 1119 | CG7335-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7335-RA | 1237 | CG7335-RA | 11..1129 | 17..1135 | 5595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20132140..20133258 | 1135..17 | 5595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:28:43 has no hits.
BS20309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:52 Download gff for
BS20309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7335-RA | 11..1127 | 17..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:26 Download gff for
BS20309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7335-RA | 11..1127 | 17..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:16 Download gff for
BS20309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7335-RA | 11..1127 | 17..1133 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:16 Download gff for
BS20309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20132142..20133258 | 17..1133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:26 Download gff for
BS20309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20125242..20126358 | 17..1133 | 100 | | Minus |
BS20309.pep Sequence
Translation from 16 to 1134
> BS20309.pep
MKKQIVREFITVKKVLHLPPEPPPPPPPPKRHVLAVGSCTLDMITIVDLP
LFPGQVQRTTEGSWRRGGPAANICTVWRRLGLECEFLGVLSRVRAFESLL
NGFQSQGIDISHCPLTNHRPAHRSIIVQRNVDTRTMLEFANANQELTYQQ
FVGAVDYQKYSWIHFECRNPVEMLRMVLAVIQFNERCPESRITLSVDLDN
LRPATMLMASMVDYVFARKTMMRTYCFMNGREVVWAIRNEMRRARTQWEK
SQPKKMPYLPPDPPDEHSNGYCPGPLNNQPVVIYNNYMEGASCLMADDTY
FKVGSQIPPKLVDVVAVNDTFSAAVIYALIKVKMRLRDAIEYGTRASSLK
LTGNGFDVLRCMPKDLIGCYYT*
BS20309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7335-PA | 372 | CG7335-PA | 1..372 | 1..372 | 1989 | 100 | Plus |
| CG7328-PA | 306 | CG7328-PA | 5..297 | 31..357 | 348 | 27.5 | Plus |
| CG12289-PA | 378 | CG12289-PA | 13..319 | 33..367 | 321 | 27.1 | Plus |
| CG7551-PB | 322 | CG7551-PB | 14..311 | 30..357 | 290 | 26.8 | Plus |
