BS20313.complete Sequence
1547 bp assembled on 2011-01-07
GenBank Submission: KX800449
> BS20313.complete
GAAGTTATCAGTCGACATGACAACACATTCACTCTCAGCCGGAGAAATGG
ACATTGTCATACGTGAGGAGGACATTTCTTTGGCCCAAATTGGCGTCTAT
GCCTCTGTGTCCTTTCTCGTTGTTTCTGCAGTTGGGGCAGCGCTGTATAC
CACCTGCTCAAAACGCTATCGCCTGAACTGGTTCGAACAAAATCTCCTGG
AGTCCGCCAACGAAAAGGATGAAGATCAGCAAAGGGAGGCTTTGGTTGCC
GGTGCCGTGGGCTACAATGTGGACAACGTGAACGAGGTACCGCGTGGGAA
ATACAGCAGCGGAAATGCCGGTAACCTCAGCCCCACCTCTCTGAAAAGCG
AGGACAATGACCCGGCCTTTTGGGTGCCGGCTTCAGTCACCTCCACGGCA
GCCATCCAGCAACAAGTGTCCAATACCACCGAGGAGTCCGCACCGCCAAC
ATCACCCACCGGGAGCCTGAAGTCAAACACCTTGTCCTACTGTTCCACCA
CCTCCGTGCCAATCGCGAGATCTGATAAGCATGTGGTCCTTGCTATGCAT
CCGAGCCGTCCCAGAGTTTCCTCTATGAACGCCAAGCTGGATCACACCAA
AATCGACATGACCTTGTATAGAAGTCATTCTCAGCCGAAGACTATCAATC
CAGTTTCACTCAACGAAGTTCGGGGTAATTTGCATGTGAGTCTTGGCTAC
GATCCAGTTGGAGGATTGCTAAATGTTCGACTCCTGGAGGCCCAGAATCT
GCAACCGAGGCAATTTAGTGGAACTGCCGACCCATATGCCAAAGTCCGCT
TGCTGCCGGATAAAAAGAACTTTTGGCAGACGCGTATACACAAGAGGACC
CTGAATCCAGTTTTCGACGAGCAGTTTGTTTTTGAGGTAACAGCCGGAGT
AATTGACAAGCGTACTGTGGAAATTTTACTATACGACTTTGATGCTTATT
CCCGGCACGTTTGCATCGGAGGAAGTAAGCTACATTTGGCCAACTTGGAT
CTCAGCGAGCAATTGAAGTTGTGGACTCCTCTTAGTTCTGCCTCGGCCCA
AGATATGAAGGTGGATTTGGGCGATATAATGGTGTCCCTAGCCTATTTGC
CATCAGCGGAGCGTTTGATGGTCGTCCTTATCAAGGCACGAAACCTGCGG
ATTGTCGACGATGCCCGGAACTCCTCGGACCCTTATGTAAAGGTAACCCT
CCTCGGTCCCGGTGGCAAAAAGATAAAGAAACGCAAGACGGGCGTTCAAA
GGGGCACCCTGAACCCAGTCTATAATGAGGCTCTTGCTTTCGATGTGGCC
AAGGAGACTTTAAAAAACTGTGTACTAGAATTCACCGTAGTCCACGATGG
CCTATTGGGATCAAGTGAAATATTAGGACGAACTCTCATTGGAAACTCTC
CGGAAGTACGCACCGAGGAAAAAATATTTTTTGAAGAAGTTTTTCGTGCC
AAAAATGCTACGGCTCAATGGGTTCCACTGCAAGAACCGGCAAACAATTT
GGCCACATCGGCCAAAAGTTCAAAGAACTAGAAGCTTTCTAGACCAT
BS20313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sytalpha-RB | 1515 | CG5559-PB | 1..1515 | 17..1531 | 7575 | 100 | Plus |
| Sytalpha-RC | 1485 | CG5559-PC | 1..1485 | 47..1531 | 7425 | 100 | Plus |
| Sytalpha-RA | 1485 | CG5559-PA | 1..1485 | 47..1531 | 7425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sytalpha-RB | 1931 | CG5559-RB | 65..1580 | 17..1532 | 7580 | 100 | Plus |
| Sytalpha-RC | 2189 | CG5559-RC | 333..1838 | 27..1532 | 7530 | 100 | Plus |
| Sytalpha-RA | 2037 | CG5559-RA | 181..1686 | 27..1532 | 7530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17602203..17602704 | 858..1359 | 2510 | 100 | Plus |
| 2L | 23513712 | 2L | 17601451..17601843 | 233..625 | 1965 | 100 | Plus |
| 2L | 23513712 | 2L | 17601912..17602146 | 626..860 | 1175 | 100 | Plus |
| 2L | 23513712 | 2L | 17600941..17601149 | 27..235 | 1045 | 100 | Plus |
| 2L | 23513712 | 2L | 17603115..17603289 | 1358..1532 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:29:28 has no hits.
BS20313.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:54 Download gff for
BS20313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytalpha-RB | 65..1579 | 17..1531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:33 Download gff for
BS20313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytalpha-RB | 65..1579 | 17..1531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:32 Download gff for
BS20313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytalpha-RB | 65..1579 | 17..1531 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:32 Download gff for
BS20313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17601453..17601843 | 235..625 | 100 | -> | Plus |
| 2L | 17600938..17601148 | 24..234 | 99 | -> | Plus |
| 2L | 17602206..17602703 | 861..1358 | 100 | -> | Plus |
| 2L | 17603116..17603288 | 1359..1531 | 100 | | Plus |
| 2L | 17601912..17602146 | 626..860 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:33 Download gff for
BS20313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17601912..17602146 | 626..860 | 100 | -> | Plus |
| arm_2L | 17600938..17601148 | 24..234 | 99 | -> | Plus |
| arm_2L | 17601453..17601843 | 235..625 | 100 | -> | Plus |
| arm_2L | 17602206..17602703 | 861..1358 | 100 | -> | Plus |
| arm_2L | 17603116..17603288 | 1359..1531 | 100 | | Plus |
BS20313.pep Sequence
Translation from 16 to 1530
> BS20313.pep
MTTHSLSAGEMDIVIREEDISLAQIGVYASVSFLVVSAVGAALYTTCSKR
YRLNWFEQNLLESANEKDEDQQREALVAGAVGYNVDNVNEVPRGKYSSGN
AGNLSPTSLKSEDNDPAFWVPASVTSTAAIQQQVSNTTEESAPPTSPTGS
LKSNTLSYCSTTSVPIARSDKHVVLAMHPSRPRVSSMNAKLDHTKIDMTL
YRSHSQPKTINPVSLNEVRGNLHVSLGYDPVGGLLNVRLLEAQNLQPRQF
SGTADPYAKVRLLPDKKNFWQTRIHKRTLNPVFDEQFVFEVTAGVIDKRT
VEILLYDFDAYSRHVCIGGSKLHLANLDLSEQLKLWTPLSSASAQDMKVD
LGDIMVSLAYLPSAERLMVVLIKARNLRIVDDARNSSDPYVKVTLLGPGG
KKIKKRKTGVQRGTLNPVYNEALAFDVAKETLKNCVLEFTVVHDGLLGSS
EILGRTLIGNSPEVRTEEKIFFEEVFRAKNATAQWVPLQEPANNLATSAK
SSKN*
BS20313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sytalpha-PB | 504 | CG5559-PB | 1..504 | 1..504 | 2565 | 100 | Plus |
| Sytalpha-PC | 494 | CG5559-PC | 1..494 | 11..504 | 2515 | 100 | Plus |
| Sytalpha-PA | 494 | CG5559-PA | 1..494 | 11..504 | 2515 | 100 | Plus |
| Sytalpha-PD | 494 | CG5559-PD | 1..494 | 11..504 | 2515 | 100 | Plus |
| Syt1-PI | 472 | CG3139-PI | 192..461 | 220..491 | 471 | 38 | Plus |
