BS20316.complete Sequence
1232 bp assembled on 2011-01-07
GenBank Submission: KX801017
> BS20316.complete
GAAGTTATCAGTCGACATGAAATTAAGACTTTTGCGGTGTTTGCGCCAAC
AGCCGGCGAAACCAGCGGCGGTTATGACCCACAAGGAGGATCAGTACCCG
GTATCACTTGACCACCACGTGCTCAAGGACATGGCCAAGGGCGTGAGGGA
CACCACCGTTAAGATCCTGCTACTAGGCACCGCCGAGTCGGGCAAGACGA
CCATCATCAAGCAAATGCGGATACTGCACATCAACGGATTTACAGACGAT
GAACGGCGAGAGAAGATACCCGAGATATATCAGAACATCCACGAGTCCAT
CCTGCAATTGGTGGGTCAGATGGGAGTGCTGGGCATTGATTTCGGCAGCT
GTACCAGCGAAAGATCGGCGGACTATATCCTCTCTCTGCCCGGATCGGCA
CCCGAATATATGAACGAGGAGTACTGCGACCACGTCACTACTTTGTGGAA
CGATGTGGGTATTCGCGCCTGCTATGATCGCTCAAATGAGTTTCCCCTGC
TGGATAGTGCGAAATACTTCCTGGACAACTTTGTGCGGATCAGCGATGCT
GAATACATACCCAGCACCGAGGACATTCTGCACAGCCGTAAGATCACCAC
CGGCATCTCGCAAATCACCTTCCGCGTACCCATTCCCAAGAGCATGGGTG
GTGGCGAACAGCAGTTCCAAATGTACGATGTGGGTGGCCAAAGGGATCAG
CGGAATAAGTGGATTCAGGTATTCGAAGGCATACAGGCCGTATTGTTCCT
GATCTCGTGCAGCGAGTTCGATCAGAATCTGCGCGAGGATCCCAGCCAGA
ATCGTTTGCAGGAGGCTCTGAAGTTGTTCAGAGCCGTGTGGCAGAATCGT
TTCCTCGCCTCCGCCGGATTGATCGTGTTCCTCAACAAGTACGACATCAT
GGAGCGAAAGATTCGGGCCGGCAAGCACATTGTGGACTACTTTCCCGAAT
ACGAGGACTTCTGCAAGAGGCCGCAGCAGGACAATTGCTTTGGCGAGAGT
GACTGGACGAAGATGTTCATCAAACAGAAGCTGGTGGATATCACACAGGA
GCCGTTCAAGCGACACTCACGGAATCAGGTGGATCTGGGTACCTCGGAAA
GGGAGTGCTACTACCACTTCACCGTCGCCACGGATACGCGATGCATCCGT
GATGTCTTCTGCGATGTCCAGAAGATGATCCTCTCGGAGAACGTGTCCAG
CATGGGCCTATTCTAGAAGCTTTCTAGACCAT
BS20316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Galphaf-RA | 1200 | CG12232-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Galphaf-RA | 1825 | CG12232-RA | 333..1533 | 16..1216 | 6005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16662849..16663548 | 1216..517 | 3500 | 100 | Minus |
| 3L | 28110227 | 3L | 16665080..16665303 | 249..26 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 16664740..16664909 | 419..250 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 16663642..16663741 | 516..417 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:38:32 has no hits.
BS20316.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:32 Download gff for
BS20316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galpha73B-RA | 314..1513 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:42 Download gff for
BS20316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphaf-RA | 334..1533 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:03 Download gff for
BS20316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphaf-RA | 334..1533 | 17..1216 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:03 Download gff for
BS20316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16662849..16663548 | 517..1216 | 100 | <- | Minus |
| 3L | 16663642..16663739 | 419..516 | 100 | <- | Minus |
| 3L | 16664741..16664909 | 250..418 | 100 | <- | Minus |
| 3L | 16665080..16665308 | 21..249 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:42 Download gff for
BS20316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16655949..16656648 | 517..1216 | 100 | <- | Minus |
| arm_3L | 16656742..16656839 | 419..516 | 100 | <- | Minus |
| arm_3L | 16657841..16658009 | 250..418 | 100 | <- | Minus |
| arm_3L | 16658180..16658408 | 21..249 | 99 | | Minus |
BS20316.pep Sequence
Translation from 16 to 1215
> BS20316.pep
MKLRLLRCLRQQPAKPAAVMTHKEDQYPVSLDHHVLKDMAKGVRDTTVKI
LLLGTAESGKTTIIKQMRILHINGFTDDERREKIPEIYQNIHESILQLVG
QMGVLGIDFGSCTSERSADYILSLPGSAPEYMNEEYCDHVTTLWNDVGIR
ACYDRSNEFPLLDSAKYFLDNFVRISDAEYIPSTEDILHSRKITTGISQI
TFRVPIPKSMGGGEQQFQMYDVGGQRDQRNKWIQVFEGIQAVLFLISCSE
FDQNLREDPSQNRLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIR
AGKHIVDYFPEYEDFCKRPQQDNCFGESDWTKMFIKQKLVDITQEPFKRH
SRNQVDLGTSERECYYHFTVATDTRCIRDVFCDVQKMILSENVSSMGLF*
BS20316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Galphaf-PA | 399 | CG12232-PA | 1..399 | 1..399 | 2103 | 100 | Plus |
| Galphas-PD | 385 | CG2835-PD | 43..374 | 47..388 | 651 | 40 | Plus |
| Galphas-PB | 385 | CG2835-PB | 43..374 | 47..388 | 651 | 40 | Plus |
| Galphaq-PD | 353 | CG17759-PD | 15..352 | 31..398 | 647 | 37.3 | Plus |
| Galphas-PE | 382 | CG2835-PE | 43..371 | 47..388 | 646 | 39.4 | Plus |
