BS20319.complete Sequence
947 bp assembled on 2011-01-07
GenBank Submission: KX803836
> BS20319.complete
GAAGTTATCAGTCGACATGAGCAACTACCGATATCAGGGTGCTGGGCTCG
GGGGCGTCGGCATGGCCGGGGGGCGTGGCTACAGCGGCATCGAGGTGCAC
GAGGTGATGCATCCGCATCACTTCACCTACGTGAGCCAGTGCGTCAAGTA
CATGATCTTCCTGCTGAACTTCGTGTTCTGGCTCTTTGGCGGCCTGCTCC
TGGGCATTGGCGTCTATGCGTTCAGGGACAAGTGGGAGGACGCGAACGGA
TCGGTGCGGCTGGAGAACTTCTACGACGTATTCCTCAATATCTCGCTGGT
GATGATCCTGGCCGGCACGGTCATCTTTCTGGTCAGCTTCTCCGGCTGCG
TGGGCGCACTGCGCGAGAACACATTCCTACTGAAGTTCTACTCCATGTGC
CTGCTGCTTTTCTTCCTGCTGGAGATGGCCATCGCCATCGTCTGCTTCGT
GTGCCCGCAGTACATGAACACCTTTTTGGAGAAGCAGTTCACGCACAAGA
TCATCCACTCGTACCGCGACGATCCCGACCTGCAGAACTTCATTGACTTT
GCCCAGCAGGAGTTCAAGTGCTGTGGCCTCAGTAATTCGGGCTACCAGGA
CTGGAGCAAAAACGAGTACTTCAACTGCAGCTCGCCGTCGGTGGAGAAGT
GCGGAGTGCCATACAGTTGTTGCATCAATGCCACCGACATATCCTCCGGC
CTGGTGAACATCATGTGCGGCTACGGCGTTCAAAACGCTCCCGTTCCGGA
GGCCACGAAACTGATCTGGACCAGCGGCTGCATAGAAATCGTTCGAGTTT
GGGCCGAGCACAATCTGTACGTGATTGCCGGCAATGCTCTGGGCATTGCG
CTCATCCAGCTGCTGGTCATCTACTTGGCCAAGACGCTGGAGGGCCAAAT
CGAGCTGCAGAAGTCGCGTTGGCTGGCGTGAAAGCTTTCTAGACCAT
BS20319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp3A-RB | 915 | CG10742-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
| Tsp3A-RA | 915 | CG10742-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
| Tsp86D-RB | 876 | CG4591-PB | 59..870 | 111..922 | 1615 | 79.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp3A-RB | 1798 | CG10742-RB | 206..1120 | 17..931 | 4575 | 100 | Plus |
| Tsp3A-RA | 1280 | CG10742-RA | 206..1120 | 17..931 | 4575 | 100 | Plus |
| Tsp86D-RB | 1401 | CG4591-RB | 384..1195 | 111..922 | 1615 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2619116..2619533 | 434..17 | 2090 | 100 | Minus |
| X | 23542271 | X | 2618436..2618761 | 931..606 | 1630 | 100 | Minus |
| 3R | 32079331 | 3R | 10869091..10869586 | 111..606 | 1010 | 80.2 | Plus |
| X | 23542271 | X | 2618868..2619040 | 606..434 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 10869643..10869959 | 606..922 | 610 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:30:02 has no hits.
BS20319.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:56 Download gff for
BS20319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp3A-RA | 206..1119 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:41 Download gff for
BS20319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp3A-RA | 206..1119 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:45 Download gff for
BS20319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp3A-RA | 206..1119 | 17..930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:45 Download gff for
BS20319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2618437..2618761 | 606..930 | 100 | <- | Minus |
| X | 2618869..2619039 | 435..605 | 100 | <- | Minus |
| X | 2619116..2619533 | 17..434 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:41 Download gff for
BS20319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2512470..2512794 | 606..930 | 100 | <- | Minus |
| arm_X | 2512902..2513072 | 435..605 | 100 | <- | Minus |
| arm_X | 2513149..2513566 | 17..434 | 100 | | Minus |
BS20319.pep Sequence
Translation from 16 to 930
> BS20319.pep
MSNYRYQGAGLGGVGMAGGRGYSGIEVHEVMHPHHFTYVSQCVKYMIFLL
NFVFWLFGGLLLGIGVYAFRDKWEDANGSVRLENFYDVFLNISLVMILAG
TVIFLVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVCPQYM
NTFLEKQFTHKIIHSYRDDPDLQNFIDFAQQEFKCCGLSNSGYQDWSKNE
YFNCSSPSVEKCGVPYSCCINATDISSGLVNIMCGYGVQNAPVPEATKLI
WTSGCIEIVRVWAEHNLYVIAGNALGIALIQLLVIYLAKTLEGQIELQKS
RWLA*
BS20319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp3A-PB | 304 | CG10742-PB | 1..304 | 1..304 | 1630 | 100 | Plus |
| Tsp3A-PA | 304 | CG10742-PA | 1..304 | 1..304 | 1630 | 100 | Plus |
| Tsp86D-PB | 291 | CG4591-PB | 1..290 | 1..302 | 1204 | 75.2 | Plus |
| Tsp86D-PA | 291 | CG4591-PA | 1..290 | 1..302 | 1204 | 75.2 | Plus |
| Tsp86D-PC | 316 | CG4591-PC | 1..290 | 1..302 | 1204 | 75.2 | Plus |
