BS20321.complete Sequence
1946 bp assembled on 2011-01-28
GenBank Submission: KX800669
> BS20321.complete
GAAGTTATCAGTCGACATGGACAGCACCGAATTTCGAAAACGTGGCATGG
AAATGGTGGAGTACATCTGCAACTATCTGGAAACGCTGAACGAGCGACGG
GTCACGCCCAGCGTGGAGCCGGGATATTTGAGACACCTGTTGCCACCTGA
GGCACCGCAGGAGCCGGAGGACTGGGACCAGATCATGAGGGACGTGGAGG
ACAAGATCATGCCCGGCGTGACGCATTGGCAGCATCCTCGCTTCCACGCC
TATTTTCCGGCGGGCAACTCGTTCCCCTCTATCCTGGGCGACATGTTGGG
CGACGGGATCGGGTGCATCGGCTTCTCCTGGGCCGCCAGTCCCGCGTGCA
CCGAGCTGGAGACCATAGTGCTCGACTGGCTTGGCAAGGCCATCGGTCTG
CCGGACCACTTTCTGGCCCTCAAGGAGGGCAGCACCGGAGGGGGAGTCAT
CCAGACTTCCGCATCGGAGTGCGTACTGGTCACGATGCTTGCTGCCAGGG
CACAGGCGCTCAAGAGGCTCAAGGCCCAGCACCCGTTTGTGGAGGAGGGT
CACCTGCTGTCCAAGCTTATGGCCTACTGCTCCAAGGAGGCGCACAGCTG
CGTGGAGAAAGCGGCGATGATCTGTTTCGTGAAGCTGCGCATTCTGGAGC
CCGACGACGACGCCAGTCTGCGCGGCCAGACGATCTACGAGGCAATGGAG
GAGGACGAACTGCAGGGTCTGGTGCCCTTCTTCGTCTCCACCACTCTGGG
TACCACGGGCTCGTGTGCGTTCGACAATCTGCCAGAGATCGGCAAGCAGT
TGCAGCGATTCCCGGGCGTTTGGCTGCACGTGGATGCCGCCTACGCGGGC
AACAGCTTCATCTGCCCCGAGCTGAAGCCGCTCCTGAAGGGCATCGAGTA
CGCCGACTCGTTCAACACCAATCCCAACAAATGGCTGCTGACGAACTTCG
ATTGCTCGACGCTGTGGGTGCGGGACCGCATCCGGCTGACTTCAGCCCTG
GTGGTGGATCCGCTGTACCTGAAGCACGGCTACTCGGATGCGGCCATCGA
CTATCGTCATTGGGGAGTTCCACTCAGTCGGCGTTTTCGTTCGCTGAAGC
TGTGGTTCGTGCTGCGATCCTATGGGATTTCCGGGCTGCAGCATTATATA
CGTCACCATATCAAGCTGGCCAAGCGGTTCGAAGAGCTCGTGCTCAAAGA
TAAGCGCTTCGAGATCTGTAACCAAGTCAAGCTGGGCCTGGTCTGCTTTC
GGCTGAAGGGTTCCGACAAGCTGAATGAGAAGCTGCTGAGCATAATCAAC
GAGTCCGGCAAGCTGCACATGGTTCCGGCCAGCGTGGGCGATCGCTACAT
CATCAGGTTCTGCGCCGTGGCCCAAAACGCGACCGCTGAGGACATTGACT
ACGCCTGGGACATCATCGTGGACTTTGCCAACGAGTTGCTGGAGAAGGAG
CAGCACGATGAGCTGTCCGAGATCATGAACCGCAAGAAGCAGGACACGCT
GGCCCAGAAGCGCTCATTCTTCGTGCGCATGGTCAGCGATCCGAAGATCT
ACAACCCGGCGATCAACAAGGCCGGCACTCCCAAGCTCTCAATGGAGCTG
CCCTCGCCCGTTGTGAGCCGCGGCAGTGCCCCCATTATCCGGACCCAGAG
TTCGGTGGACCACAACTCGTGGATATCCTGGCCGCTGGCATTCCTCTTCA
ACAGCAACAACGAGGAAAAGGGCAGTAACGTCTCGTTGCGTTTCCGACAC
CTGGACACCAACGTACGACCATCGTCGTCGCGACGAAACTCCGGAGCCGG
CTCGTCACCCTCTCCGGAAAACGAGTTGGACTACGTGAACGTCCAGCAGC
AGCAGATGGAACAGCGATCGCCACGACGATCGCCCATGGCGGTGCGCAAG
GCATCGTCCACGCGGGACAACCTCAACTAAAAGCTTTCTAGACCAT
BS20321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc2-RA | 1914 | CG30446-PA | 1..1914 | 17..1930 | 9570 | 100 | Plus |
| Tdc1-RA | 1764 | CG30445-PA | 875..956 | 894..975 | 230 | 85.4 | Plus |
| Hdc-RD | 2544 | CG3454-PD | 229..389 | 245..405 | 205 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc2-RA | 2303 | CG30446-RA | 163..2076 | 17..1930 | 9570 | 100 | Plus |
| Tdc1-RA | 2281 | CG30445-RA | 1087..1168 | 894..975 | 230 | 85.4 | Plus |
| Hdc-RD | 3733 | CG3454-RD | 920..1080 | 245..405 | 205 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6685271..6685781 | 1740..1230 | 2555 | 100 | Minus |
| 2R | 25286936 | 2R | 6687407..6687846 | 890..451 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 6688003..6688310 | 454..147 | 1540 | 100 | Minus |
| 2R | 25286936 | 2R | 6687137..6687355 | 1106..888 | 1095 | 100 | Minus |
| 2R | 25286936 | 2R | 6684972..6685162 | 1930..1740 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 6688373..6688502 | 146..17 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 6686660..6686787 | 1231..1104 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 6678236..6678317 | 975..894 | 230 | 85.4 | Minus |
| 2R | 25286936 | 2R | 10241871..10242031 | 245..405 | 205 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:29:47 has no hits.
BS20321.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:56 Download gff for
BS20321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc2-RA | 151..2062 | 17..1928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:23 Download gff for
BS20321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc2-RA | 163..2074 | 17..1928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:33 Download gff for
BS20321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc2-RA | 163..2074 | 17..1928 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:33 Download gff for
BS20321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6688003..6688310 | 147..454 | 100 | <- | Minus |
| 2R | 6688373..6688502 | 17..146 | 100 | | Minus |
| 2R | 6684974..6685161 | 1741..1928 | 100 | <- | Minus |
| 2R | 6685271..6685779 | 1232..1740 | 100 | <- | Minus |
| 2R | 6686660..6686786 | 1105..1231 | 100 | <- | Minus |
| 2R | 6687139..6687353 | 890..1104 | 100 | <- | Minus |
| 2R | 6687408..6687842 | 455..889 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:23 Download gff for
BS20321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2574644..2574858 | 890..1104 | 100 | <- | Minus |
| arm_2R | 2572479..2572666 | 1741..1928 | 100 | <- | Minus |
| arm_2R | 2572776..2573284 | 1232..1740 | 100 | <- | Minus |
| arm_2R | 2574165..2574291 | 1105..1231 | 100 | <- | Minus |
| arm_2R | 2574913..2575347 | 455..889 | 100 | <- | Minus |
| arm_2R | 2575508..2575815 | 147..454 | 100 | <- | Minus |
| arm_2R | 2575878..2576007 | 17..146 | 100 | | Minus |
BS20321.pep Sequence
Translation from 16 to 1929
> BS20321.pep
MDSTEFRKRGMEMVEYICNYLETLNERRVTPSVEPGYLRHLLPPEAPQEP
EDWDQIMRDVEDKIMPGVTHWQHPRFHAYFPAGNSFPSILGDMLGDGIGC
IGFSWAASPACTELETIVLDWLGKAIGLPDHFLALKEGSTGGGVIQTSAS
ECVLVTMLAARAQALKRLKAQHPFVEEGHLLSKLMAYCSKEAHSCVEKAA
MICFVKLRILEPDDDASLRGQTIYEAMEEDELQGLVPFFVSTTLGTTGSC
AFDNLPEIGKQLQRFPGVWLHVDAAYAGNSFICPELKPLLKGIEYADSFN
TNPNKWLLTNFDCSTLWVRDRIRLTSALVVDPLYLKHGYSDAAIDYRHWG
VPLSRRFRSLKLWFVLRSYGISGLQHYIRHHIKLAKRFEELVLKDKRFEI
CNQVKLGLVCFRLKGSDKLNEKLLSIINESGKLHMVPASVGDRYIIRFCA
VAQNATAEDIDYAWDIIVDFANELLEKEQHDELSEIMNRKKQDTLAQKRS
FFVRMVSDPKIYNPAINKAGTPKLSMELPSPVVSRGSAPIIRTQSSVDHN
SWISWPLAFLFNSNNEEKGSNVSLRFRHLDTNVRPSSSRRNSGAGSSPSP
ENELDYVNVQQQQMEQRSPRRSPMAVRKASSTRDNLN*
BS20321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc2-PA | 637 | CG30446-PA | 1..637 | 1..637 | 3359 | 100 | Plus |
| Tdc1-PA | 587 | CG30445-PA | 1..482 | 1..484 | 1456 | 56.8 | Plus |
| Hdc-PC | 619 | CG3454-PC | 1..476 | 1..477 | 1407 | 55.1 | Plus |
| Hdc-PD | 847 | CG3454-PD | 1..476 | 1..477 | 1407 | 55.1 | Plus |
| Hdc-PB | 847 | CG3454-PB | 1..476 | 1..477 | 1407 | 55.1 | Plus |
