BS20322.complete Sequence
1316 bp assembled on 2011-01-07
GenBank Submission: KX806428
> BS20322.complete
GAAGTTATCAGTCGACATGTACCTCAATGAGAATAAAAATCGTATATGGG
CGTGTGCCCTGTGTTTTTTTTTATCACTGATCTGCGTGCAAGGACGTGTT
GGTCTGGGACCTGGAGTACAGGAATGGGACTATGTGGAAGTTCGGAAGGG
CGCTCACCTCTTTTACTGGCTTCTATACACCACTGCCAATGTATCTCATT
TCATAGAGAGGCCGCTGGTAATCTGGCTGCAAGGGGGACCCGGTGTTGCA
TCCACCGGCAGCGGGATATTTGAGCAGCTTGGACCCATCGACATCGAGGG
CAAAACGCGGGAAAGCAGTTGGTTGAAGCACGTGAATGTTCTTTTTGTGG
ACAGTCCGGTGGGCACGGGATTCGCTTACGTTGAGCATCACAGCCTCTAT
GCCAGAAACAACAGGCAGATAGCCCTCGATCTTGTCCAGTTGATGAAGCA
GTTTCTTACGAAGTATCCCGATTTCCGAAAGGTGCCCCTGCATATATTCT
CCGAGAGCTATGGCGGAAAAATGGCTCCCGAATTCGCGCTGGAATTGCAT
TTGGCGAAGAAAGTAGGCGAATTAGAGTGCGATCTGAAATCCGTGGTAGT
AGGCAATCCATGGACCTCTCCACTGGACAGTATTCTGTCCTATGCCCCCT
TTCTGCTCCAATCGGGCATTGTGGATGATGACGGTTATCGTCGAATATCG
CGACTGGCCGGCGAGTTAGCTGCACTTGTCTATGGCGGAAAGTGGTTACG
CGCCTTGATGAAGGCGACCGAAGTTCAGGATGAGATCTCCGCCAGTGCGG
GCGGAGTCTTCATCTACAACACCCAGCGGCGGGTTCACGTGGACGAGGTC
TACCGGTACGGCGAAGATCCGCAAATGAGCGACTTTATGCGATCCAATGT
GACTAAAGCACTGGGGCTAGGCAATATGCCCGTGTGGATGGAACAAAACT
CGACAGTCTTCGAACGACTCAGTCAGGATATTTTTAAGCCAGCGAATCAA
ATAGTTACCAAATTGCTGGAAGAGACGCCGATACAGGTGGGTATTTATTC
TGGCATTCTGGACCTACTGTGCGCAACACCCGGCACCGTTAACTGGATCC
GCCGACTTAAGTGGCGCCGCAGTTTGGAGTATGCCAAGGCACCCCGTACC
GCCATTCGGATTGAAGGGATGCTGGAGGGGTACGAAAAGCACGGCGGAAA
ACTCAGTATGTTCTGGGTCTTTCGGGCGGGACATCTGGTACAGCAGGAGA
ACCCGGCGGCAATGGCGTATATTTTAAGGTACTTTACCAGCTATGGATAG
AAGCTTTCTAGACCAT
BS20322.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31823-RA | 1284 | CG31823-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31823-RA | 1403 | CG31823-RA | 79..1362 | 17..1300 | 6420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15899293..15900206 | 1004..91 | 4570 | 100 | Minus |
| 2L | 23513712 | 2L | 15898920..15899218 | 1300..1002 | 1495 | 100 | Minus |
| 2L | 23513712 | 2L | 15900370..15900446 | 93..17 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:28:53 has no hits.
BS20322.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:53 Download gff for
BS20322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31823-RA | 42..1325 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:27 Download gff for
BS20322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31823-RA | 79..1362 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:20 Download gff for
BS20322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31823-RA | 79..1362 | 17..1300 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:20 Download gff for
BS20322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15898920..15899215 | 1005..1300 | 100 | <- | Minus |
| 2L | 15899293..15900204 | 93..1004 | 100 | <- | Minus |
| 2L | 15900371..15900446 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:27 Download gff for
BS20322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15898920..15899215 | 1005..1300 | 100 | <- | Minus |
| arm_2L | 15899293..15900204 | 93..1004 | 100 | <- | Minus |
| arm_2L | 15900371..15900446 | 17..92 | 100 | | Minus |
BS20322.pep Sequence
Translation from 16 to 1299
> BS20322.pep
MYLNENKNRIWACALCFFLSLICVQGRVGLGPGVQEWDYVEVRKGAHLFY
WLLYTTANVSHFIERPLVIWLQGGPGVASTGSGIFEQLGPIDIEGKTRES
SWLKHVNVLFVDSPVGTGFAYVEHHSLYARNNRQIALDLVQLMKQFLTKY
PDFRKVPLHIFSESYGGKMAPEFALELHLAKKVGELECDLKSVVVGNPWT
SPLDSILSYAPFLLQSGIVDDDGYRRISRLAGELAALVYGGKWLRALMKA
TEVQDEISASAGGVFIYNTQRRVHVDEVYRYGEDPQMSDFMRSNVTKALG
LGNMPVWMEQNSTVFERLSQDIFKPANQIVTKLLEETPIQVGIYSGILDL
LCATPGTVNWIRRLKWRRSLEYAKAPRTAIRIEGMLEGYEKHGGKLSMFW
VFRAGHLVQQENPAAMAYILRYFTSYG*
BS20322.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31823-PA | 427 | CG31823-PA | 1..427 | 1..427 | 2255 | 100 | Plus |
| CG32483-PA | 439 | CG32483-PA | 9..439 | 15..427 | 1122 | 49.9 | Plus |
| CG3344-PA | 446 | CG3344-PA | 11..446 | 14..427 | 1112 | 49.8 | Plus |
| CG31821-PB | 427 | CG31821-PB | 3..421 | 16..426 | 868 | 41.2 | Plus |
| CG31821-PA | 427 | CG31821-PA | 3..421 | 16..426 | 868 | 41.2 | Plus |
