BS20323.complete Sequence
602 bp assembled on 2011-01-07
GenBank Submission: KX804440
> BS20323.complete
GAAGTTATCAGTCGACATGCTCCGGACTTTTCGTCAAATAGCCCGACTAG
GAAGATCCCTAAGGACGCCATTTCCATCTAAAAGTCTGCCTAAACTCTCA
ACCACCTTAGAGCTGCAGGCTCCTGTACACACCAGTGCTTCAGCGTGGAA
GTACGACAAGAAATCCTCACGAGCATCGGATGACTTGGACAGCGACGACG
AGGATGATGAGGATTTCAAGGACGAAAGGGACTCCAAGGTGGTCAAGACC
AAGGTGAACTCACTGCGCGCCGATCTCCTACTGAAAGCTGGCCTGGGCAT
GGCGAGAAACAAAGTGGAACTGAATTTCTACGAGAGCAAGATACGCGTCA
ATGGAAAGAAGCTGCCCAAAAAGAGTGCCCAGCTGGAAGTCGGCGATGAA
ATCGACGTAATCCGAGGCTTTAGTCAATCGAATCCTTCCCATCTGGTCGT
GGCCCGCGTCTCAATCCTCTCCGTCAGCGAGCGCGAGGAAGGACTCAGCG
TCCACCTGAGGCGCTACAAATCCCTGCTGGTCGAGAATTACCGGGGACCC
AACGCCTTCAAATCCTCAGAGCACGTTGCTCATTAAAAGCTTTCTAGACC
AT
BS20323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4884-RB | 570 | CG4884-PB | 1..570 | 17..586 | 2850 | 100 | Plus |
| CG4884-RA | 570 | CG4884-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42487-RA | 1718 | CG42487-RA | 1089..1660 | 17..588 | 2860 | 100 | Plus |
| CG4884-RB | 1718 | CG4884-RB | 1089..1660 | 17..588 | 2860 | 100 | Plus |
| CG4884-RA | 649 | CG4884-RA | 48..619 | 17..588 | 2860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27957807..27958099 | 309..17 | 1465 | 100 | Minus |
| 3R | 32079331 | 3R | 27957414..27957622 | 588..380 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 27957672..27957744 | 382..310 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:29:03 has no hits.
BS20323.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:53 Download gff for
BS20323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4884-RA | 487..1054 | 17..584 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:28 Download gff for
BS20323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4884-RA | 487..1054 | 17..584 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:24 Download gff for
BS20323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4884-RA | 48..615 | 17..584 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:24 Download gff for
BS20323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27957807..27958099 | 17..309 | 100 | | Minus |
| 3R | 27957418..27957619 | 383..584 | 100 | <- | Minus |
| 3R | 27957672..27957744 | 310..382 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:28 Download gff for
BS20323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23783140..23783341 | 383..584 | 100 | <- | Minus |
| arm_3R | 23783394..23783466 | 310..382 | 100 | <- | Minus |
| arm_3R | 23783529..23783821 | 17..309 | 100 | | Minus |
BS20323.pep Sequence
Translation from 16 to 585
> BS20323.pep
MLRTFRQIARLGRSLRTPFPSKSLPKLSTTLELQAPVHTSASAWKYDKKS
SRASDDLDSDDEDDEDFKDERDSKVVKTKVNSLRADLLLKAGLGMARNKV
ELNFYESKIRVNGKKLPKKSAQLEVGDEIDVIRGFSQSNPSHLVVARVSI
LSVSEREEGLSVHLRRYKSLLVENYRGPNAFKSSEHVAH*
BS20323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4884-PB | 189 | CG4884-PB | 1..189 | 1..189 | 945 | 100 | Plus |
| CG4884-PA | 189 | CG4884-PA | 1..189 | 1..189 | 945 | 100 | Plus |
